Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0994 ATGACCGGAGATGAAGTAAGTGATAGCTCCTTGTGGAGTAGGGAGCAGAATAAGGCATTTGAGAATGCCCTGGCAACTTATCCTGAGGATTTATCAGATCGGTGGGAGAAGATTGCTGCAGATGTACCAGGGAAAACCCTAGAAGAGGTTAAACATCATTATGAGCTTTTAGTTGAAGATGTTACCCAGATCGAGTCTGGCTCTGTGCCTCTACCTTGCTATAATTCTTCTTCTGAGGGTTCATCAAGCCATGTGGGTGATGAAGCAGTTGGTAAGAAGGGCAGCCATTTTTCAAACAGTGAGTCCAATCATGGAGGGAAGGCTTCAAGGTCAGATCAGGAGCGTCGCAAAGGGGTTGCTTGGACAGAGGATGAGCACAGGTTATTTCTTCTTGGTTTGGATAAATATGGGAAAGGTGATTGGCGAAGTATATCTCGGAACTTTGTGGTGACAAGAACACCTACACAAGTGGCAAGTCATGCACAAAAGTACTTCATCCGCTTAAACTCGATGAACAAAGATAGGAGGAGGTCAAGCATTCATGATATCACCAGTGTTGGCAATGGAGATATTTCTGTGCCCCAAGGACCAATCACTGGCCAAACAAATGGTTCTGCTTCAGGAGCTTCCTCCGGAAAATCAACTAAACCAACCCCTCAACCCCCAGCCGGGCCGCCGCCGGGGGTTGGCATGTATGGTTCTACAACTATAGGGCAACCAATAGGAGGACCCCTTGTTTCAGCAGTTGGAACACCAGTGAATCTTTCGGCTCCACCACACATGGCATATGGTGTCCGAGCCCCAGTCCCAGGAGCAGTGGTTCCTGGTGCGCCAATGAACATGGGTCCTATGACATACCCAATGCCACATACATCTGCTCATAGGTAA 888 0.4797 MTGDEVSDSSLWSREQNKAFENALATYPEDLSDRWEKIAADVPGKTLEEVKHHYELLVEDVTQIESGSVPLPCYNSSSEGSSSHVGDEAVGKKGSHFSNSESNHGGKASRSDQERRKGVAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVGNGDISVPQGPITGQTNGSASGASSGKSTKPTPQPPAGPPPGVGMYGSTTIGQPIGGPLVSAVGTPVNLSAPPHMAYGVRAPVPGAVVPGAPMNMGPMTYPMPHTSAHR* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0994 295 FunFam Transcription factor SRM1 4 71 - -
Vvi10g0994 295 SUPERFAMILY Homeodomain-like 12 65 IPR009057 -
Vvi10g0994 295 MobiDBLite consensus disorder prediction 183 217 - -
Vvi10g0994 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 169 IPR017930 -
Vvi10g0994 295 NCBIfam myb-like DNA-binding domain, SHAQKYF class 117 167 IPR006447 GO:0003677
Vvi10g0994 295 MobiDBLite consensus disorder prediction 72 119 - -
Vvi10g0994 295 ProSiteProfiles Myb-like domain profile. 12 58 IPR001005 -
Vvi10g0994 295 Gene3D - 10 57 - -
Vvi10g0994 295 CDD SANT 12 58 IPR001005 -
Vvi10g0994 295 ProSiteProfiles SANT domain profile. 121 169 IPR017884 -
Vvi10g0994 295 Gene3D - 119 171 - -
Vvi10g0994 295 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Vvi10g0994 295 SMART sant 8 60 IPR001005 -
Vvi10g0994 295 SMART sant 117 167 IPR001005 -
Vvi10g0994 295 Pfam Myb-like DNA-binding domain 120 165 IPR001005 -
Vvi10g0994 295 Pfam Myb-like DNA-binding domain 12 54 IPR001005 -
Vvi10g0994 295 CDD SANT 120 165 IPR001005 -
Vvi10g0994 295 SUPERFAMILY Homeodomain-like 115 170 IPR009057 -
Vvi10g0994 295 FunFam transcription factor MYB1R1 119 170 - -
Vvi10g0994 295 PANTHER TRANSCRIPTION FACTOR KUA1 9 291 - -
Vvi10g0994 295 MobiDBLite consensus disorder prediction 183 236 - -
Vvi10g0994 295 ProSiteProfiles Myb-like domain profile. 113 165 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0994 Vvi-Chr10 17128037 17136126 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi10g0994 Myb_DNA-binding 3.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0994 - - vvi:100268113 548.895