Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0985 ATGGACATCAAGCCATCAAGATCGGTTGGAGACAAAAATGAAAGGGGAAGAAGACATGTGAACAACATGGTTTGTTCCTATTGGCTCCGTGGGAGGTGCAACAGAAACCGTTGTAGGTTCCTGCACCAAGAATTGCCCCAAAACACCCACTATCAAGTTTCAAATCAGTTCCGCAAAAACTGCTGGCAGAGGAATCCCGACTCTGATTCGAAGAGTGCATCAAGTTTAATGAGTCTGGATAGGTCATCAAGTTCAACAACTCCGAAGCGTTCATCAGCTTCAAATCAATCCCATAGAAACAACAGGGAGGGGACTCTCTATTCTGACAAAAAGGGTGAATGGGACTCAACTAATCTAAGGTGTTCATCAAGTCCAACAAGATCAGGAAGTAGCGCTGGAAATGGAATTACACAGAAAGTAATTGGAGAAAGGGTCTGCAAGTACTGGCTACATGGAAATTGTGTGAAGGCAGATAAGTGCCAGTATCTCCATTCATGGTTTAAGGGCCATGGGGTTTTCAAGTTGGCCGAGCTTAATGGGCACATCAAGGCTATCTCAGGAATTGTGCTTCCTTCTGGCTCAGAGAAGCTCTATACTGCCAGTAGAGATGGGTATATACGGGTTTGGGACTGCCATACTGGTCAATGTGATGGTGTGGTCAATCTTGGAGGGGAAATTGGGTCCTTAATCAGTGCAGGCCCTTGGCTATTTGCTGGAATAAAAGATGTTGTTAAGGCATGGAATATTGAGTCTTGTGCCGATCTCTCTCTGGATGGACCAGTTGGGCAAATTTATGCTATGGTGGTGGATCATGATATGCTCTTCGCAGGGGCAGAGAATGGCACTATATATGCATGGAAACCCAATAAGGAAACCAATGCTTTTGAGCTGGCTACAACATTGGGAGGCCACAATTGTGCTGTGGTTTCGCTCACAGTTGGTGGTGGGAGGCTATATTCTGGTTCCATGGACAATACAATAAGAGTGTGGGATCTTAATACATTACAGTGTATTCATACTCTGAAGGAGCATGCATCAGTTGTGATGTCTCTTGTTTGCTGGGGTCCCTATTTGATATCATGTTCATTGGACCAAACAATCAAGGTTTGGTTTGCTACTGAAGCTGGCAACTTGGAAGTGACCTATACACATAATGAAGAACATGGTGTGCTTGCACTTTTCGGTATGTTCGATTCAGAAGGAAAACCAATATTGTTGTGCTCTTGCAATGACAATTCTGTTCGGCTATATGAATTACCATCATTCACCGAGAGGGCCAGGATTTTTGCAAAGGAAGAAGTCCGAGCGATTCAAATAGGTCCTGGGGGACTCTTTTTCATTGGGGATGGAACTGGACAAGTTGATGTTTGGAAATGGCAGGCGGAGCCAACTTCATTGGCATCCTGA 1407 0.4463 MDIKPSRSVGDKNERGRRHVNNMVCSYWLRGRCNRNRCRFLHQELPQNTHYQVSNQFRKNCWQRNPDSDSKSASSLMSLDRSSSSTTPKRSSASNQSHRNNREGTLYSDKKGEWDSTNLRCSSSPTRSGSSAGNGITQKVIGERVCKYWLHGNCVKADKCQYLHSWFKGHGVFKLAELNGHIKAISGIVLPSGSEKLYTASRDGYIRVWDCHTGQCDGVVNLGGEIGSLISAGPWLFAGIKDVVKAWNIESCADLSLDGPVGQIYAMVVDHDMLFAGAENGTIYAWKPNKETNAFELATTLGGHNCAVVSLTVGGGRLYSGSMDNTIRVWDLNTLQCIHTLKEHASVVMSLVCWGPYLISCSLDQTIKVWFATEAGNLEVTYTHNEEHGVLALFGMFDSEGKPILLCSCNDNSVRLYELPSFTERARIFAKEEVRAIQIGPGGLFFIGDGTGQVDVWKWQAEPTSLAS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0985 468 FunFam Zinc finger CCCH domain-containing protein 48 258 466 - -
Vvi10g0985 468 Gene3D - 18 165 - -
Vvi10g0985 468 MobiDBLite consensus disorder prediction 117 135 - -
Vvi10g0985 468 SMART WD40_4 375 418 IPR001680 GO:0005515
Vvi10g0985 468 SMART WD40_4 421 458 IPR001680 GO:0005515
Vvi10g0985 468 SMART WD40_4 334 371 IPR001680 GO:0005515
Vvi10g0985 468 SMART WD40_4 171 210 IPR001680 GO:0005515
Vvi10g0985 468 SMART WD40_4 294 331 IPR001680 GO:0005515
Vvi10g0985 468 SMART WD40_4 250 287 IPR001680 GO:0005515
Vvi10g0985 468 SUPERFAMILY CCCH zinc finger 143 165 IPR036855 GO:0046872
Vvi10g0985 468 Pfam WD domain, G-beta repeat 175 210 IPR001680 GO:0005515
Vvi10g0985 468 Pfam WD domain, G-beta repeat 336 370 IPR001680 GO:0005515
Vvi10g0985 468 Pfam WD domain, G-beta repeat 299 331 IPR001680 GO:0005515
Vvi10g0985 468 PANTHER - 21 466 IPR044715 -
Vvi10g0985 468 MobiDBLite consensus disorder prediction 62 135 - -
Vvi10g0985 468 ProSitePatterns Trp-Asp (WD) repeats signature. 318 332 IPR019775 -
Vvi10g0985 468 PRINTS G protein beta WD-40 repeat signature 318 332 IPR020472 -
Vvi10g0985 468 PRINTS G protein beta WD-40 repeat signature 197 211 IPR020472 -
Vvi10g0985 468 PRINTS G protein beta WD-40 repeat signature 358 372 IPR020472 -
Vvi10g0985 468 MobiDBLite consensus disorder prediction 62 102 - -
Vvi10g0985 468 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 210 - -
Vvi10g0985 468 ProSiteProfiles Zinc finger C3H1-type profile. 24 45 IPR000571 GO:0046872
Vvi10g0985 468 ProSiteProfiles Zinc finger C3H1-type profile. 145 167 IPR000571 GO:0046872
Vvi10g0985 468 SMART c3hfinal6 142 166 IPR000571 GO:0046872
Vvi10g0985 468 SMART c3hfinal6 21 44 IPR000571 GO:0046872
Vvi10g0985 468 SUPERFAMILY WD40 repeat-like 173 460 IPR036322 GO:0005515
Vvi10g0985 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 340 IPR001680 GO:0005515
Vvi10g0985 468 Gene3D - 166 313 IPR015943 GO:0005515
Vvi10g0985 468 Gene3D - 314 467 IPR015943 GO:0005515
Vvi10g0985 468 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 301 334 - -
Vvi10g0985 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 210 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0985 Vvi-Chr10 16872787 16875473 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0985 244 422 Miscellaneous Gene Families AT5G08390 30.108 1.55e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi10g0985 WD40 0.0019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0985 - - vvi:100248072 952.97