Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0977 ATGGCTATAAGTTTATTGGCGGGCTGCTTAAACGCTGCTTATGAGTTATGGCTAGCAGGAAATTTTCAACCAGTTGATACAATCTCACAAGGTCAATCAATCACAACCTCTCAGACCATCATATCTGCGGGTGGTGAATTTGAATTAGGATTCTTTTCTCCTGGAAACTCCACAAAATACTATGTGGGGATATGGTACAAGAAAGTATCAGAGCCAACCATTGTGTGGGTAGCTAACCGAGATTATTCATTCACAGATCCGTCTGTGGTTCTTACTGTCAGGACAGATGGTAACCTCGAGGTTTATGCTTACTGTGGGCCTTTTGGAATCTGTCATGACCATGCAGTCGATAGATTCTGTGAATGTTTGCCAGGTTTGGAACCTGGCTTCCCTAATAACTGGAACTTGAACGACACATCTGGAGGGTGTGTGAGGAAAGCAGATTTGCAGTGTGGCAATAGTACTCATGATAATGGGGAGAGAGACCAGTTTCATCGGGTGTCTAATGTGAGGCTGCCAGATTATCCACTAACACTCCCAACGAGTGGTGCCATGCAGTGCGAGTCAGATTGCCTAAATAACTGCTCTTGCTCTGCTTATTCTTACTACATGGAGAAGTGTACAGTATGGGGTGGAGATCTTCTAAACTTGCAACAGCTATCAGATGACAACAGTAATGGTCAAGATTTCTATCTCAAACTTGCGGCCTCTGAGCTAAGTGGGAAAGTTTCAAGCAGCAAGTGGAAGGTATGGCTAATTGTTACACTGGCCATTTCCGTAACTTCAGCCTTTGTCATTTGGGGGATACAGAGAAGGCTACGAAGAAAAGGGGAAAATTTGTTACTATTTGATTTAAGTAACAGCTCAGTAGATACCAACTATGAACTTAGTGAGGCAAATAAACTTTGGAGAGGTGAGAAGAAGGAAGTTGATTTGCCAATGTTCAGTTTTGTGAGTGTATCTGCTGCTACCAATAACTTCTCTATTGAAAATAAACTAGGAGAGGGTGGTTTTGGACCTGTTTACAAGGGAAAGTCACAAAAAGGGTATGAGGTAGCTTTGAAGAGGCTTTCAAAAAGATCTGGACAGGGATGGGAGGAGTTAAAAAATGAGGCCATGCTCATAGCCAAGCTGCAACATAAGAATCTTGTGAAGCTATTCGGCTGCTGCATTGAGCAAGATGAGAAGATATTGATTTATGAGTATATGCCCAACAAAAGCTTGGATTTCTTCCTATTTGGTAACATCAAAATTTCAACCAGAAGTGGCACCTGGGACAGGGATGGGCAGGCTTTCAGCTTGATTAGTGAGATGCGCTTAAACGAGGTGTTTAATTTCAGTTATTCGTTTAGTAAGGAGGAGAGCTATATCAATTACTCTATTTATAATTCTTCAAAAATATGCAGATTCGTGCTGGATGTGTCAGGGCAGATTAAACAAATGTCATGGCTTGAAGCCTCTCATCAATGGCATATGTTTTGGTTTCAACCAAAAACGCAATGTGAGGTTTATGCTTACTGTGGGCCTTTTGGAATCTGTCATGACCATGCAGTCGATAGATTCTGTGAATGTTTGCCAGGTTTTGAACCTGGCTTCCCTAATAACTGGAACTTGAACGACACATCTGGAGGGTGTGTGAGGAAAGCAGATTTGCAGTGTGGCAATAGTACTCATGATAATGGGGAGAGAGACCAGTTTTATCGGGTGTCTAATGTGAGGCTGCCAGATTATCCACTAACACTCCCAACGAGTGGTGCCATGCAGTGCGAGTCAGATTGCCTAAATAACTGCTCTTGCTCTGCTTATTCTTACTACATGGAGAAGTGTACAGTATGGGGTGGAGATCTTCTAAACTTGCAACAGCTATCAGATGACAACAGTAATGGTCAAGATTTCTATCTCAAACTTGCGGCCTCTGAGCTAAGTGGGAAAGGTAATAAAATTTCAAGCAGCAAGTGGAAGGTATGGCTAATTGTTACACTGGCTATTTCCGTAACTTCAGCCTTTGTCATTTGGGGGATACGGAGAAGGCTAAGAAGAAAAGGGGAAAATTTGTTACTATTTGATTTAAGTAACAGCTCAGTAGATACCAACTATGAACTTAGTGAGACAAGTAAACTTTGGAGCGGCGAGAAGAAGGAAGTTGATTTGCCAATGTTCAGTTTTGCGAGTGTATCTGCTGCTACCAATAACTTCTCTATTGAAAATAAACTAGGAGAGGGTGGTTTTGGACCTGTTTACAAGGGAAAGTCACAAAAAGGGTATGAGGTAGCTGTGAAGAGGCTTTCAAAAAGATCTGGACAGGGATGGGAGGAGTTAAAAAATGAGGTCATGCTCATAGCCAAGCTGCAACATAAGAATCTTGTGAAGCTGTTCGGCTACTGCATTGAGAAAGATGAGAAGATATTGATTTATGAGTATATGCCCAACAAAAGCTTGGATTTCTTCCTATTTGATCCTACAAAACATGGGATTCTGAATTGGAAGACACGGGTTCACATCATTAAAGGGGTTGCTCAGGGACTTCTTTATCTACATCAGTACTCCAGATTGAGGATTATTCATCGAGATTTGAAGGCTAGCAACATTCTTCTGGATAAGGATATGAATCCTCAAATATCAGATTTTGGAATGGCAAGAATATTTGGAGGCAACGAATCAAAAGCAACAAATCATATAGTTGGGACTTAG 2691 0.4155 MAISLLAGCLNAAYELWLAGNFQPVDTISQGQSITTSQTIISAGGEFELGFFSPGNSTKYYVGIWYKKVSEPTIVWVANRDYSFTDPSVVLTVRTDGNLEVYAYCGPFGICHDHAVDRFCECLPGLEPGFPNNWNLNDTSGGCVRKADLQCGNSTHDNGERDQFHRVSNVRLPDYPLTLPTSGAMQCESDCLNNCSCSAYSYYMEKCTVWGGDLLNLQQLSDDNSNGQDFYLKLAASELSGKVSSSKWKVWLIVTLAISVTSAFVIWGIQRRLRRKGENLLLFDLSNSSVDTNYELSEANKLWRGEKKEVDLPMFSFVSVSAATNNFSIENKLGEGGFGPVYKGKSQKGYEVALKRLSKRSGQGWEELKNEAMLIAKLQHKNLVKLFGCCIEQDEKILIYEYMPNKSLDFFLFGNIKISTRSGTWDRDGQAFSLISEMRLNEVFNFSYSFSKEESYINYSIYNSSKICRFVLDVSGQIKQMSWLEASHQWHMFWFQPKTQCEVYAYCGPFGICHDHAVDRFCECLPGFEPGFPNNWNLNDTSGGCVRKADLQCGNSTHDNGERDQFYRVSNVRLPDYPLTLPTSGAMQCESDCLNNCSCSAYSYYMEKCTVWGGDLLNLQQLSDDNSNGQDFYLKLAASELSGKGNKISSSKWKVWLIVTLAISVTSAFVIWGIRRRLRRKGENLLLFDLSNSSVDTNYELSETSKLWSGEKKEVDLPMFSFASVSAATNNFSIENKLGEGGFGPVYKGKSQKGYEVAVKRLSKRSGQGWEELKNEVMLIAKLQHKNLVKLFGYCIEKDEKILIYEYMPNKSLDFFLFDPTKHGILNWKTRVHIIKGVAQGLLYLHQYSRLRIIHRDLKASNILLDKDMNPQISDFGMARIFGGNESKATNHIVGT* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0977 896 ProSiteProfiles Protein kinase domain profile. 732 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0977 896 CDD PAN_AP_plant 550 637 - -
Vvi10g0977 896 PIRSF SRK 98 421 IPR024171 GO:0004674
Vvi10g0977 896 PIRSF SRK 1 101 IPR024171 GO:0004674
Vvi10g0977 896 PIRSF SRK 415 896 IPR024171 GO:0004674
Vvi10g0977 896 SUPERFAMILY Protein kinase-like (PK-like) 310 417 IPR011009 -
Vvi10g0977 896 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 102 IPR036426 -
Vvi10g0977 896 ProSiteProfiles PAN/Apple domain profile. 151 235 IPR003609 -
Vvi10g0977 896 Gene3D Transferase(Phosphotransferase) domain 1 808 896 - -
Vvi10g0977 896 ProSiteProfiles PAN/Apple domain profile. 553 637 IPR003609 -
Vvi10g0977 896 Pfam S-locus glycoprotein domain 421 530 IPR000858 GO:0048544
Vvi10g0977 896 ProSiteProfiles Protein kinase domain profile. 327 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0977 896 FunFam Uncharacterized protein 707 807 - -
Vvi10g0977 896 Gene3D Phosphorylase Kinase; domain 1 302 402 - -
Vvi10g0977 896 Gene3D Phosphorylase Kinase; domain 1 708 807 - -
Vvi10g0977 896 Pfam Protein kinase domain 733 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0977 896 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 808 896 - -
Vvi10g0977 896 Gene3D - 23 107 IPR036426 -
Vvi10g0977 896 SMART blect_4 25 156 IPR001480 -
Vvi10g0977 896 CDD PAN_AP_plant 148 235 - -
Vvi10g0977 896 SMART ntp_6 159 234 IPR003609 -
Vvi10g0977 896 SMART ntp_6 561 636 IPR003609 -
Vvi10g0977 896 ProSiteProfiles Bulb-type lectin domain profile. 25 169 IPR001480 -
Vvi10g0977 896 SMART serkin_6 732 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0977 896 Pfam PAN-like domain 159 216 IPR003609 -
Vvi10g0977 896 Pfam PAN-like domain 561 618 IPR003609 -
Vvi10g0977 896 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 25 101 - -
Vvi10g0977 896 SUPERFAMILY Protein kinase-like (PK-like) 713 896 IPR011009 -
Vvi10g0977 896 FunFam Uncharacterized protein 302 402 - -
Vvi10g0977 896 ProSitePatterns Serine/Threonine protein kinases active-site signature. 853 865 IPR008271 GO:0004672|GO:0006468
Vvi10g0977 896 Pfam Protein tyrosine and serine/threonine kinase 328 458 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0977 Vvi-Chr10 16788137 16805967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0977 720 896 Receptor kinase-like Gene Family AT4G11530 66.854 4.39e-73 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi10g0977 Pkinase 3.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0977 - - vvi:100256692 957.207