Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0957 ATGGATGCTTTCTTTGGTCATATCCCAGGTGGTTTTGGTCGGGATTCAGTATTTCATGCAGGCTTCATGCCCATTCAAGCAGTGTTCCAGAATCCTTTTATGCCCACCGCAGTGAGGGCTCCACCTTTGAGTTACAACCTTTCTGCACCCCTCAGCATTGAAGTGGCTAAACGTCCTGAAATGAATGTTTTCTCAGCTTCTCAATGTCCAAAGATTGGCAACCCTTCTGATATTAGTTCCTCAGATTCTATACATACACAGAAGATGCTTCGTCTGAGTATGGATGTAAGCTCAGATAGACATGAGATTGTCAACCTAGGAGCTTCAGATAAACATGAGTTGCCACTCTTGTGGAAAAATAATGCTCCCAGTGTGACACTGTCAGACATTATTAATAGCTCAGAAACTCGGCCTGGAAGTTCTCCTCCTGCAAATATACATGAGGATGATGAGGAAATTAAAGGGAAAGGTTGGTTGATGCTTGTGCAGAAAGAGTTGCGGAATACTGATGTTGGTAACCTGGGAAGAATTGTGCTTCCAAAAAAGGATGCAGAAGCAAATCTTCCTCCCCTAGTTGCTAAAGATGGACTGGTTCTGCAAATGGAGGACATGAAATATTCAGTTAACTGGAAGTTTAAGTATAGGTACTGGCCGAACAACAGAAGTAGGATGTATGTTATGGAGAACACAGGAAATTTTGTAAAAATGCATGATCTTCAGCCTGGTGATTTGTTTGTAGTTTATAAGGATGAAAGCTCTGGAAAATATATTGTTCGTGGAAAGAAGGCAGTGAAACCGGCACATGCTGAGGATAAGGATGGATCAATACATCGACACAGGGTAGGTGAAGCAGACAGGGACTGGTACAGACAGATTTGGCCAGAACAAGGGACCTCAATACAGCTCGGTACACTCTGA 918 0.4292 MDAFFGHIPGGFGRDSVFHAGFMPIQAVFQNPFMPTAVRAPPLSYNLSAPLSIEVAKRPEMNVFSASQCPKIGNPSDISSSDSIHTQKMLRLSMDVSSDRHEIVNLGASDKHELPLLWKNNAPSVTLSDIINSSETRPGSSPPANIHEDDEEIKGKGWLMLVQKELRNTDVGNLGRIVLPKKDAEANLPPLVAKDGLVLQMEDMKYSVNWKFKYRYWPNNRSRMYVMENTGNFVKMHDLQPGDLFVVYKDESSGKYIVRGKKAVKPAHAEDKDGSIHRHRVGEADRDWYRQIWPEQGTSIQLGTL* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0957 305 Gene3D - 159 279 IPR015300 -
Vvi10g0957 305 SMART B3_2 162 264 IPR003340 GO:0003677
Vvi10g0957 305 CDD B3_DNA 163 259 IPR003340 GO:0003677
Vvi10g0957 305 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 102 270 IPR044800 GO:0003700
Vvi10g0957 305 SUPERFAMILY DNA-binding pseudobarrel domain 161 257 IPR015300 -
Vvi10g0957 305 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677
Vvi10g0957 305 FunFam B3 domain-containing transcription factor FUS3 158 273 - -
Vvi10g0957 305 Pfam B3 DNA binding domain 163 259 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0957 Vvi-Chr10 16556978 16566825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0957 156 267 B3 DNA Binding Superfamily AT3G24650 56.250 1.11e-37 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi10g0957 B3 3.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0957 - - vvi:100256682 628.632