Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0952 ATGCCGAAGAGCTTTGCCTCAGAGTCACGGTCTCCACCTTCCCTCCAGTCCATCAAATCACTGCCTGTTGGTTTTAGGTTTACAGGTTCACCTACTTCTGGTGTCTCTGGACAATCTGATGATGTAAATACAGAAAATAGTGATGTGATCTGTGATAGTATTCCTGAAAACGGTGATTTAAGTGGTGAGGTGGTTGGGGCAATTGAGGATGGTGCTGGAGAGATGGACCAGGCTAGTGATGATACACCCTATGATAGGAAAACCATAGCCATTGATGAAAGACCTTCGGTGGGTGATGAAGACTTGGGTTTTGTGGCTCCTCATTTGCGTTCAGTGGCACCATCTCGATCTGAATTCAGGTGGGCCGATACCACATCCTATGCTGCAAAGAAGAAGCTTCAATCTTGGTTTCTACTTCCAAATGGAAACTGGGAGCTGGGCAAGATATTGTCTACTTCAGGGACTGAGACTGTTATTTCACTGCCTGAGGGAAAAGTTTTAAAGGTGAATACTGACAGCCTGTTACCTGCAAACCCCGATATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGGTGTTGTACAATCTTCAACATAGATACAATCAAGATATGATTTATACCAAAGCAGGACCAGTTCTGGTTGCCATCAATCCCTTTAAGGAAGTTCCGTTGTATGGAAATGATTATATTGATGCGTATAAGCGTAAATCAATTGAGAGCCCACATGTCTATGCCATCACTGACACAGCCATCCGTGAAATGAGACGAGATGAAGTAAATCAATCTATTATTATCAGTGGTGAAAGTGGAGCAGGGAAAACTGAGACGGCAAAGATAGCAATGCAATATTTGGCTGCCCTTGGTGGCGGTAGCGGAATAGAATATGAGATATTGAAAACAAATCCTATCTTGGAGGCCTTTGGTAATGCAAAAACATCCAGAAATGACAACTCAAGTCGCTTTGGAAAGCTGATTGAGATTCACTTTAGTGAAACTGGGAAAATATCGGGTGCCAAGATTCAAACCTTTTTACTTGAAAAGTCTAGAGTGGTCCAATGTGCAGAAGGAGAGAGGTCATATCATATATTTTATCAACTCTGTGCTGGAGCTCCACCAGCTCTTAGAGAGAAATTGGATTTGAAGAGTGCATATGAGTATAAGTATTTGAAGCAGAGCAATTGCTACTCAATTACTGGGGTTGATGATGCTGAGCAATTTCGCATTGTTGTGGAAGCTTTGGATATTGTTCATGTCAGCAAAGAGGACCAAGAGAGTGTATTTGCCATGCTTGCTGCAGTTTTGTGGATGGGAAATGTCTCGTTTACTGTGACTGATAATGAAAACCATGTTGAAGCTGTGGCAGATGAAGGTCTGACCAATGTTGCTAAGTTGATTGGATGTGATGTTGGGGATCTAAAGCAAGCTTTATCTACTCGCAAGATGAGAGTTGGAAATGATAATATTATTCAAAAGCTAACTCTATCGCAGGCCATTGACACAAGAGATGCTTTGGCGAAATCAATTTATGCTTGTTTATTTGACTGGCTGGTCGAACAAATCAACAAGTCACTTGCTGTAGGAAAACGGCGTACTGGCAGATCCATTAGCATTCTTGATATCTATGGATTTGAATCATTCGATAGAAATAGCTTTGAGCAGTTCTGCATAAATTATGCAAATGAGAGGTTGCAGCAGCACTTTAACCGTCATTTATTCAAGTTAGAGCAAGAGGAATATATCCAAGATGGAATTGACTGGAATAGAGTTGATTTTGAGGACAATCAAGACTGTCTAAATCTTTTTGAGAAGAAACCATTAGGTCTATTGTCTCTGTTAGACGAGGAGTCCACCTTCCCTAATGGCACAGACTTGACCTTTGCAAACAAGCTTAAGCAGCATCTGAATTCTAATTCTTGTTTCAGAGGAGAACGAGGAAAAGCTTTTAGTGTCTGTCATTATGCAGGAGAGGTCATGTATGATACCACTGGGTTTCTAGAGAAGAACAGAGATTTGTTACACTTGGATTCCATTCAACTTCTATCTTCTTGCACATGCCATCTGCCCCAAATCTTTGCATCCAATATGCTTACTCAATCTGAGAAGCCTGTTGTTGGCCCTTTATATAAGTCAGGTGGAGCGGATTCCCAGAAGCTAAGTGTTGCAACAAAATTTAAGGGTCAACTGTTCCAACTGATGCAGCGTCTTGAGACCACAACACCACATTTCATTCGTTGCATTAAGCCCAACAATTTTCAGTCTCCTGGAAACTATGACCAAGGACTTGTACTGCAGCAACTAAGATGTTGTGGAGTCCTAGAAGTAGTTAGAATATCGAGGTCGGGCTTTCCAACTCGGATGTCTCATCAGAAGTTTGCTAGAAGGTATGGTTTTCTTCTACTGGAGGGTGTTGCATCTCAAGATCCACTTAGTGTTTCAGTTGCAATCCTTCATCAGTTCAATATTCTGCCTGAGATGTATCAAGTTGGCTACACAAAATTGTTTTTCCGAACGGGACAGATTGGTGTCCTTGAGGATACAAGAAACCACACTCTCCATGGCATTTTACGTGTTCAAAGTTGCTTCAGAGGTCACCAAGCTCGTTGTCATCTCAGGGATCTTAGGGGAGGAATTGCGACTCTTCAGTCATTTGTTCGTGGTGAAAAAACCAGAAAGGAATTTGCAATCTTACTGCAGAGACACAGAGCTGCTGTGGTTATACAAAAGCAGATTAGAAGCAGGATCGGCCGGAAAAAATTCATGAGCATTTATGATGCATCCATAGTGATACAATCAGTTATTCGTGGCTGGTTAGTCCGAAGGTGCTCAGGAGATCTTGGGTTACTCACTGTTGGCGGCAGAAAGGATAAAGAGTCAGATGAAGTGCTGGTAAAGTCATCATTCCTTGCTGAACTACAGCGCCGAGTTCTGAAAGCTGAGGCTGCTCTGAGAGAGAAAGAAGAGGAGAACGACATCCTCCACCAACGCCTGCAACAGTATGAGAATCGCTGGTCCGAATATGAGCTGAAAATGAAGTCCATGGAAGAAGTGTGGCAGAAACAAATGAGGTCTCTACAATCCAGCCTCTCCATTGCAAAGAAGAGCCTAGCCATGGATGATTCCAGGAGAAACTCTGATGCGTCGGTCAATCTAACCGATGACAGGGACTCCAGCTGGGACACAGGCAGCAACTTCAGGGGCCAGGAGAGCAATGGGATGAGACCAATGAGTGCAGGCCTGACGGTCATAAGCCGGATGGCTGAAGAATTCGAGCAGCGGAGTCAAGTGTTTGGGGACGATGCCAAGTTCCTGGTGGAAGTAAAATCCGGTCAAACTGAGGCAAGCCTCAACCCAGACCGGGAACTCAGACGGTTGAAGCAGATGTTTGAAGCTTGGAAGAAGGATTACGGGTCAAGGCTCCGGGAAACAAAGGTGATATTGCAGAAGCTGGGAAACGAAGAAGGGAGTGGTGATAAAGCGAGAAAGAAATGGTGGGTGAGGAGGAACAGCTCCAGGTTCAATTAA 3543 0.4347 MPKSFASESRSPPSLQSIKSLPVGFRFTGSPTSGVSGQSDDVNTENSDVICDSIPENGDLSGEVVGAIEDGAGEMDQASDDTPYDRKTIAIDERPSVGDEDLGFVAPHLRSVAPSRSEFRWADTTSYAAKKKLQSWFLLPNGNWELGKILSTSGTETVISLPEGKVLKVNTDSLLPANPDILDGVDDLMQLSYLNEPSVLYNLQHRYNQDMIYTKAGPVLVAINPFKEVPLYGNDYIDAYKRKSIESPHVYAITDTAIREMRRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGAKIQTFLLEKSRVVQCAEGERSYHIFYQLCAGAPPALREKLDLKSAYEYKYLKQSNCYSITGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWMGNVSFTVTDNENHVEAVADEGLTNVAKLIGCDVGDLKQALSTRKMRVGNDNIIQKLTLSQAIDTRDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWNRVDFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFRGERGKAFSVCHYAGEVMYDTTGFLEKNRDLLHLDSIQLLSSCTCHLPQIFASNMLTQSEKPVVGPLYKSGGADSQKLSVATKFKGQLFQLMQRLETTTPHFIRCIKPNNFQSPGNYDQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLEGVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNHTLHGILRVQSCFRGHQARCHLRDLRGGIATLQSFVRGEKTRKEFAILLQRHRAAVVIQKQIRSRIGRKKFMSIYDASIVIQSVIRGWLVRRCSGDLGLLTVGGRKDKESDEVLVKSSFLAELQRRVLKAEAALREKEEENDILHQRLQQYENRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAMDDSRRNSDASVNLTDDRDSSWDTGSNFRGQESNGMRPMSAGLTVISRMAEEFEQRSQVFGDDAKFLVEVKSGQTEASLNPDRELRRLKQMFEAWKKDYGSRLRETKVILQKLGNEEGSGDKARKKWWVRRNSSRFN* 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0952 1180 Gene3D Kinesin motor domain 186 784 IPR036961 -
Vvi10g0952 1180 Coils Coil 975 1023 - -
Vvi10g0952 1180 SMART iq_5 905 927 IPR000048 GO:0005515
Vvi10g0952 1180 SMART iq_5 879 901 IPR000048 GO:0005515
Vvi10g0952 1180 SMART iq_5 856 878 IPR000048 GO:0005515
Vvi10g0952 1180 SMART iq_5 928 950 IPR000048 GO:0005515
Vvi10g0952 1180 Gene3D - 908 949 - -
Vvi10g0952 1180 Gene3D - 860 907 - -
Vvi10g0952 1180 PRINTS Myosin heavy chain signature 309 336 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi10g0952 1180 PRINTS Myosin heavy chain signature 594 622 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi10g0952 1180 PRINTS Myosin heavy chain signature 541 569 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi10g0952 1180 PRINTS Myosin heavy chain signature 267 292 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi10g0952 1180 PRINTS Myosin heavy chain signature 213 232 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi10g0952 1180 MobiDBLite consensus disorder prediction 1057 1081 - -
Vvi10g0952 1180 Pfam Myosin head (motor domain) 185 843 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi10g0952 1180 Gene3D - 788 856 - -
Vvi10g0952 1180 Gene3D - 551 745 - -
Vvi10g0952 1180 MobiDBLite consensus disorder prediction 1048 1081 - -
Vvi10g0952 1180 PANTHER MYOSIN 176 1174 - -
Vvi10g0952 1180 CDD MYSc_Myo8 197 843 IPR036022 -
Vvi10g0952 1180 Gene3D Myosin VI head, motor domain, U50 subdomain 426 723 - -
Vvi10g0952 1180 ProSiteProfiles IQ motif profile. 880 909 IPR000048 GO:0005515
Vvi10g0952 1180 ProSiteProfiles Myosin motor domain profile. 183 855 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi10g0952 1180 ProSiteProfiles IQ motif profile. 906 933 IPR000048 GO:0005515
Vvi10g0952 1180 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 130 179 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vvi10g0952 1180 FunFam Unconventional myosin-XIX 553 745 - -
Vvi10g0952 1180 Pfam IQ calmodulin-binding motif 931 947 IPR000048 GO:0005515
Vvi10g0952 1180 Pfam IQ calmodulin-binding motif 907 926 IPR000048 GO:0005515
Vvi10g0952 1180 Pfam IQ calmodulin-binding motif 861 878 IPR000048 GO:0005515
Vvi10g0952 1180 ProSiteProfiles IQ motif profile. 859 886 IPR000048 GO:0005515
Vvi10g0952 1180 MobiDBLite consensus disorder prediction 1 51 - -
Vvi10g0952 1180 MobiDBLite consensus disorder prediction 1 56 - -
Vvi10g0952 1180 SMART MYSc_2a 177 856 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi10g0952 1180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 903 IPR027417 -
Vvi10g0952 1180 Gene3D - 365 424 - -
Vvi10g0952 1180 FunFam Myosin heavy chain 365 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0952 Vvi-Chr10 16418093 16443806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0952 14 1179 Myosins gene family AT1G50360 75.942 0.0 1820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0952 - K10357 vvi:100254832 2335.84