Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0924 ATGGTGGTAATTGCACAAATCCGGGAAAAGGCGTTACTATCTTATTTCTATGAAATGATTTGTCAATTGAACCACTATGGAGTTGTTCTCAGAAAACCCACTTCTGCACACACCCTGTCTTTTACTCCACTGAGGATTCGATACTTTCACTGTTGTAGACCTGCCAATTACTTGAAACTCGAGTCATCTATCCCTGGAAGGAGAGTCTCTCGGGTGGTTAGAACTGAAGCTCAGGATGTGCTCTTTGATTATCTGCATTGTACTAGGAGCTTCCACTTAACAGATGCTGAACACATGAGCAAGAACTCACCTCATTTTCTTCAGAAATTGCTGTCCAAGGTTGAAAATGAGCAGGATGTTGCTCGGTCCTTATCGAAATTCCTTAGATACAATCCCATTAATGAATTTGAGCCCTTTTTCGAGAGCTTGGGTTTAGCCCCATCTGAGATCTCAGCTCTGCTCCCTCGTAATTTGATGTTTTTGAGTGATGATTGTGTCATGATAGAGAATTACCATGTTCTATGTGATTATGGTATTGCACGGAGTAGCATTGGTAGGATGTATAAGGAGGTGCAAGCCATTTTCAGGTATGAGCTTGGGTTATTGGGTTCAAAGGTTCGAGCATATGAAGGACTAGGTTTGAGTAGATCCACAGTTATTAAGCTTGTTAGTTGCTGCCCCTGGCTTTTGGTTGGTGGCGTTAATAGTCAATTTGTTATGGTTCTTAAGAGGGTAAAGGGACTAGGCTTTGAGAGTGATTGGATTGGTGGATATTTATCGGGTAAAAGCTCATACAATTGGAAAAGAATGCATGATACAATTGATTTTCTTGAGAAAGTGGGATATAGTGAGGAGCAAATGGTGAGTTTATTTAAAACAAATCCTGAACTGCTGTTTGAAGGCTCCGGCAAGAAGTTCTATGTGTTGATTGGACGGTTACTTAAATTGGGTTTCAAAATGAAGGGGGTTTTGTCTTTGTTCTTACAAAACCCTCAAATCTTGTCAAAAAAGTGTGTAAAGAATCTTTGGCAGGCAGTGGGTTTTCTCTTTGAGATAGGAATGAAGGTAGAAGATATTGTAAGTATAGTATCTTCCCATGTGCAACTTCTGTGTTCATGTTCTCTGAAAGGACCCAGAACTGTTTTAAGGAGCTTAAAAGTTGGGAGAGAGGGTTTATGTCAAATTATAAAAGAAGACCCATCTGAGTTGCTAAGTTTGGCTTCAAAATCAAAGATTAATAGCATGGAACATGTAACTTGCCAAAGTCCAAGTAAACATTTAGAAAAAACAACATTCTTGTTGAGGTTAGGATATGTTGAAAACTCGGATGAGATGTTCAAAGCATTGAAACTGTTCAGGGGCAGAGGGGATCAATTACAAGAGAGGTTTGACTGCCTGGTACAAGCTGGTTTGGATTGCAATGTTGTCTCAAACATGATTAAACAAGCTCCATCAGTGCTAAACCAGACTAAATATGTGATTGAGAAGAAGATTGACTGCCTAAGAAATTGCTTAGGTTACCCATTGCAATCTGTTGTGGCATTTCCATCATATTTATGTTACGACATCGAGAGGATCAATCTTAGATTTTCAATGTATGTGTGGCTGAGGGATAAAGGTGCAGCAAAATCCAACTTGTCTTTGAGCACAATCCTTGCATGTTCAGATGCAAGATTTGTGAAGTATTTTGTAGATGTCCACCCAGAAGGGCCTGCCCAATGGGAAAGATTAAGGAAATCATTACCTTGA 1749 0.3968 MVVIAQIREKALLSYFYEMICQLNHYGVVLRKPTSAHTLSFTPLRIRYFHCCRPANYLKLESSIPGRRVSRVVRTEAQDVLFDYLHCTRSFHLTDAEHMSKNSPHFLQKLLSKVENEQDVARSLSKFLRYNPINEFEPFFESLGLAPSEISALLPRNLMFLSDDCVMIENYHVLCDYGIARSSIGRMYKEVQAIFRYELGLLGSKVRAYEGLGLSRSTVIKLVSCCPWLLVGGVNSQFVMVLKRVKGLGFESDWIGGYLSGKSSYNWKRMHDTIDFLEKVGYSEEQMVSLFKTNPELLFEGSGKKFYVLIGRLLKLGFKMKGVLSLFLQNPQILSKKCVKNLWQAVGFLFEIGMKVEDIVSIVSSHVQLLCSCSLKGPRTVLRSLKVGREGLCQIIKEDPSELLSLASKSKINSMEHVTCQSPSKHLEKTTFLLRLGYVENSDEMFKALKLFRGRGDQLQERFDCLVQAGLDCNVVSNMIKQAPSVLNQTKYVIEKKIDCLRNCLGYPLQSVVAFPSYLCYDIERINLRFSMYVWLRDKGAAKSNLSLSTILACSDARFVKYFVDVHPEGPAQWERLRKSLP* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0924 582 Gene3D Transcription termination factor 3, mitochondrial 306 579 IPR038538 -
Vvi10g0924 582 Gene3D Transcription termination factor 3, mitochondrial 100 305 IPR038538 -
Vvi10g0924 582 SMART mt_12 185 215 IPR003690 GO:0003690|GO:0006355
Vvi10g0924 582 SMART mt_12 477 508 IPR003690 GO:0003690|GO:0006355
Vvi10g0924 582 SMART mt_12 324 355 IPR003690 GO:0003690|GO:0006355
Vvi10g0924 582 SMART mt_12 509 542 IPR003690 GO:0003690|GO:0006355
Vvi10g0924 582 SMART mt_12 220 251 IPR003690 GO:0003690|GO:0006355
Vvi10g0924 582 SMART mt_12 288 319 IPR003690 GO:0003690|GO:0006355
Vvi10g0924 582 FunFam Transcription termination factor MTEF18, mitochondrial 309 577 - -
Vvi10g0924 582 FunFam mTERF family protein 113 264 - -
Vvi10g0924 582 Pfam mTERF 274 504 IPR003690 GO:0003690|GO:0006355
Vvi10g0924 582 Pfam mTERF 459 559 IPR003690 GO:0003690|GO:0006355
Vvi10g0924 582 PANTHER CGI-12 PROTEIN-RELATED 81 298 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0924 Vvi-Chr10 15271471 15273219 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi10g0924 mTERF 2.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0924 - - vvi:100242606 1169.45