Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0919 ATGGAAGATCGCTGGAGAGGCGGCGGCGGCTATAGAGGAAGAGATGGCGGTCTCCATAGGGGAAGAAGCGGCGGTGATCACCCGCGCCATCGCCACGGAGGAGGCTTTAGAGGAGGTCGAAGGCCTGGGTACAGCAGAGGGTACGAGGAAGACGCACCGCCGCCACCAGTGCACCGGTGGAGAGGGCCTCCCGAAATGGGTCACGACCGAGACTACTACCACTATGGCGGAAGCAGTGATAGGTATGGTGGCAATGGTGGCGGGGGGTGGCGGAGCTCTGGCCTCAGCCCTAGAAATTCTCCGGCGTGGCGCCCTCTTCCTCCGTCGCCGCCGCGGCGCCCGCTTCCTCTGCCGTCGCCCCCCCGGCGCCCTCTTCCTCCGCTCTCGCCCCCGCGGCGCCATCCTCCTCCGCTCTCGCCCCCGCGGCGCCATCTTCCTCCGTCGTCGCCCCCCCGGCGCCCACTTCCTCCGCCGTCGCCGCCTCGGCGCCCGTTGCCTTCCATGCCCGCTTTTGTCGAGTCCCGGAGGTCTCCTGATACTGTTCCAGAAATGGAGCCATCAAAACTTTTAGGTAGCTTGACACCAACATCCTCCTTGGAACGCATGGACAGAGTTCTCCCTATAAGGCGACCTGACAAAGGTGGCACAAATGCAATCCAATCTACCATGGTTCGTGTCAATCATTTCCCTGTGAAATTCAACTCTGAGAAAATCATTCTGCACTATGATGTTGATATTAAACCAGAGGTGCTACCCAAGCATGGTCGTACCTTGAAGTTATCAAAGTCTAATCGCTGCATGATAAAAGAGAAGTTGTTCTCTGATGATCCCTCACGATTTCCCTTGTCAAGAACGGCTTTTGATGGTGAGAAGAATATTTTTAGTGTTGTTGAGCTGCCCACTGGAAAATTTAAGGTGGAGTTCTCTGAGAGCGAAGACATGAAGATCTGTTCGTATATATTCACCATAAAGCTTGTGAATCAACTAGAGCTTCGCAAGTTGAAGGATTATTTAAGTGGGAAACTTTTTTCCATACCTCGTGAGATATTGCAAGGGATGGATGTGGTGATGAAGGAGAATCCTGCAAGGCATATGATCTCTGTTGGACGGAGCTTTTACCCAACTCTGTTCTCTCTAGATGATGATCTTGGACATGGCATTGTAGCTTCTAGAGGATTTTTACATAGCCTCAAGCCCACGGCCCAGGGTTTAACCTTATGTTTGGACTACTCAGTCTTAGCATTTCGAAAGCCAATTCCGGTTATAGATTTCCTTGAGGAGCATGTTAATGGATTTAAGTTGAATGATTTAAGAAGAGTAAGGAAAGAAGTTGAGGTTGCTCTAAAAGGATTAAAAGTTAGAGTCATTCATCGTCTTTGCAAACAAAAATACACTATCTCAGGATTAAGTGGTGAGGACACAAGGTATCTTTCATTTATCGCTGAAGACCTAGAGGGCAAATCTCCAGCAAAGAAAGTTGGGATTATTGATTATTTCAGGGAAAAATATGGGAAGGATATTAAGTACAAGGATATTCCGTGCTTAGATTTGGGGAAAAACAATAGGAAGAACTATGTACCCATGGAGTTCTGCATCTTGACTGAGGGACAGAGGTTTCTCAAAGAGAACTTGGATAGAAATGGGGCTCAGAAGTTGAAAAATTTGTCACTGGTTGCCCCTAAAGTCAGAGAGAACAACATATGTGAAATGGTGCGATCAAAGACTGGACCATGTGGTGGAGATATGATCAATAACTTTGGGATTGAAGTCAACATGAGGATGACTACAGTTGCAGGACGTGTGATTATGGCACCTGAATTAAAGCTAGGAGGGGCTCATAATGGAAGGATGAGCAAGATTACTGTGGACAGGAACAGGTGTCACTGGAATTTTGTAGGAAAATCTGTGGTGGAGGGCAAACACATTGATCGGTGGGCTGTACTTGATTTCAGTGCATATGAAGGATTCAACAGACTGAATCCTGACCACTTTATTCCCAAATTTATCAGGCGCTGTGCAAGTCTTGGAATTAGAATGGATGAGCCACTTTTGTATCAGTCGTCTCGAATGAATGCCTTCTCCAATGTTGCCATGCTTCGTGAACTGCTCTTAGGAGTAGCTGGCAGAGCTCATGATAGTACAAAAAACCAGTTGCAAATTCTTGTATGTGTGATGGCTAGGAAGGATCCTGGCTACAACTATCTCAAGTGGTTCTGTGAAACCAACATTGGGATAGTTACTCAATGTTGTTTGTCCAGCCCTGCAAATAAAGCAAATGACCAGTATCTTGCAAACTTGGCTCTCAAGATGAATGCCAAGCTTGGAGGCAGCAACGTGGAGCTCATTGACCGGCTTCCTCATTTTGAGAATGAAGGTTATGTAATGTTTGTAGGTGCTGATGTCAATCATCCTGGTGCTTGGAACTCAGCTAGCCCTTCCATAGCTGCTGTTGTTGCCACTGTAAATTGGCCTGCTGTAAATCGTTATGCTGCTCGTGTACGCCCCCAGCTCCATCGAACTGAGAAGATTCTAAATTTTGGGGACATGTGCCTGGAGCTTATTGAGACCTATGCTCAGGTGAATAGAGCCAAGCCGGATAAGATTGTGGTGTTTAGGGATGGGGTGAGCGAGGGCCAATTTGACATGGTGCTTAATGAAGAATTAGTAGATCTGAAGGGGGCTATCCAGAGGGGAAATTACAACCCAACAATCACACTTATTATAACCCAGAAGAGACATCAGACTCGACTGTTTCCAGAAAGCAAGAGGGAAAGGGGTCAGGACAGGAGCTTCAATGAGAATGTGTCTCCAGGCACGGTTGTAGACACAACTGTGGTTCACCCCTTCGAGTTTGATTTTTATCTTTGTAGCCATTATGGTGGTATTGGGACGAGCAAGCCAACACACTACCATGTCCTCTATGACGAGCACAGGTTCTCTTCTGACCAACTCCAGAAGCTTATCTACAACTTGTGTTTCACCTTTGTGCGGTGTACCAAACCTGTCTCCCTTGTTCCTCCTGTATACTATGCCGACCTTGCTGCATACAGAGGACGGCTCTACCATGACGCCCTGGAGTTGGAGCGCCCAGCTTCAGCTTCTGCAGCCTCTGCAGCTTCATTTGATGAGAGGTTTTACCGCTTGCACGGGGATCTGGAAAATACGATGTTTTTTGTTTGA 3180 0.478 MEDRWRGGGGYRGRDGGLHRGRSGGDHPRHRHGGGFRGGRRPGYSRGYEEDAPPPPVHRWRGPPEMGHDRDYYHYGGSSDRYGGNGGGGWRSSGLSPRNSPAWRPLPPSPPRRPLPLPSPPRRPLPPLSPPRRHPPPLSPPRRHLPPSSPPRRPLPPPSPPRRPLPSMPAFVESRRSPDTVPEMEPSKLLGSLTPTSSLERMDRVLPIRRPDKGGTNAIQSTMVRVNHFPVKFNSEKIILHYDVDIKPEVLPKHGRTLKLSKSNRCMIKEKLFSDDPSRFPLSRTAFDGEKNIFSVVELPTGKFKVEFSESEDMKICSYIFTIKLVNQLELRKLKDYLSGKLFSIPREILQGMDVVMKENPARHMISVGRSFYPTLFSLDDDLGHGIVASRGFLHSLKPTAQGLTLCLDYSVLAFRKPIPVIDFLEEHVNGFKLNDLRRVRKEVEVALKGLKVRVIHRLCKQKYTISGLSGEDTRYLSFIAEDLEGKSPAKKVGIIDYFREKYGKDIKYKDIPCLDLGKNNRKNYVPMEFCILTEGQRFLKENLDRNGAQKLKNLSLVAPKVRENNICEMVRSKTGPCGGDMINNFGIEVNMRMTTVAGRVIMAPELKLGGAHNGRMSKITVDRNRCHWNFVGKSVVEGKHIDRWAVLDFSAYEGFNRLNPDHFIPKFIRRCASLGIRMDEPLLYQSSRMNAFSNVAMLRELLLGVAGRAHDSTKNQLQILVCVMARKDPGYNYLKWFCETNIGIVTQCCLSSPANKANDQYLANLALKMNAKLGGSNVELIDRLPHFENEGYVMFVGADVNHPGAWNSASPSIAAVVATVNWPAVNRYAARVRPQLHRTEKILNFGDMCLELIETYAQVNRAKPDKIVVFRDGVSEGQFDMVLNEELVDLKGAIQRGNYNPTITLIITQKRHQTRLFPESKRERGQDRSFNENVSPGTVVDTTVVHPFEFDFYLCSHYGGIGTSKPTHYHVLYDEHRFSSDQLQKLIYNLCFTFVRCTKPVSLVPPVYYADLAAYRGRLYHDALELERPASASAASAASFDERFYRLHGDLENTMFFV* 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0919 1059 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 220 1024 - -
Vvi10g0919 1059 Pfam Argonaute linker 1 domain 367 417 IPR014811 -
Vvi10g0919 1059 ProSiteProfiles PAZ domain profile. 419 535 IPR003100 GO:0005515
Vvi10g0919 1059 MobiDBLite consensus disorder prediction 1 32 - -
Vvi10g0919 1059 Coils Coil 434 454 - -
Vvi10g0919 1059 Gene3D - 601 782 - -
Vvi10g0919 1059 Gene3D paz domain 413 540 - -
Vvi10g0919 1059 SMART DUF1785_2 366 418 IPR014811 -
Vvi10g0919 1059 Pfam Piwi domain 721 1019 IPR003165 GO:0003676
Vvi10g0919 1059 SMART PAZ_2_a_3 423 558 IPR003100 GO:0005515
Vvi10g0919 1059 MobiDBLite consensus disorder prediction 1 194 - -
Vvi10g0919 1059 SUPERFAMILY PAZ domain 414 572 IPR036085 GO:0005515
Vvi10g0919 1059 Gene3D - 789 1059 IPR036397 GO:0003676
Vvi10g0919 1059 ProSiteProfiles Piwi domain profile. 720 1023 IPR003165 GO:0003676
Vvi10g0919 1059 Pfam N-terminal domain of argonaute 222 357 IPR032474 -
Vvi10g0919 1059 CDD PAZ_argonaute_like 418 531 - -
Vvi10g0919 1059 FunFam Protein argonaute 7 413 539 - -
Vvi10g0919 1059 SMART Piwi_a_2 720 1022 IPR003165 GO:0003676
Vvi10g0919 1059 SUPERFAMILY Ribonuclease H-like 714 1023 IPR012337 -
Vvi10g0919 1059 MobiDBLite consensus disorder prediction 101 167 - -
Vvi10g0919 1059 Pfam PAZ domain 438 544 IPR003100 GO:0005515
Vvi10g0919 1059 CDD Piwi_ago-like 582 1021 IPR045246 -
Vvi10g0919 1059 MobiDBLite consensus disorder prediction 43 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0919 Vvi-Chr10 15190409 15195118 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0919 223 1021 Eukaryotic Initiation Factors Gene Family AT5G43810 36.299 2.27e-149 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0919 K11593 - vvi:100240850 1798.87