Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0918 ATGAAGGTGATGGCTGCATATTTGCTCGCTGTATTAGGAGGCTATGACAGCCTTTGCGCCGATGACCTCAAGAGCATCCTCGGATTGGTTGGAGCTGGAGCTGATGATGTTGGGATTGAGCTGCTGTTGTTCGAAGTTAAGGGTAAGGATATAACAGAGCTTATTGCATCTGGAAGAGAGAAATTGGCATCGGTGCCTTCTGGTGGTGGTGCCGCTGTTGCAACTGTTGCAGCTAGTGATGGTGGTGGTGCAGCACCTGCTGCCACAGAACCGAGGAAGGAGAAAAAGGTGGAAGAGAAAGAGGGCTCAGATGAGGACATGGGCTTCGGTCTATTTGATTGA 342 0.5029 MKVMAAYLLAVLGGYDSLCADDLKSILGLVGAGADDVGIELLLFEVKGKDITELIASGREKLASVPSGGGAAVATVAASDGGGAAPAATEPRKEKKVEEKEGSDEDMGFGLFD* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0918 113 MobiDBLite consensus disorder prediction 81 113 - -
Vvi10g0918 113 Pfam 60s Acidic ribosomal protein 20 112 - -
Vvi10g0918 113 Gene3D - 1 59 IPR038716 -
Vvi10g0918 113 FunFam 60S acidic ribosomal protein P2 1 59 - -
Vvi10g0918 113 CDD Ribosomal_P2 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vvi10g0918 113 Hamap 50S ribosomal protein L12 [rpl12]. 2 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vvi10g0918 113 MobiDBLite consensus disorder prediction 89 107 - -
Vvi10g0918 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0918 Vvi-Chr10 15163112 15163453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0918 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 63.717 5.65e-27 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0918 K02943 - vvi:100257998 177.178