Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0917 ATGGAGGGTCGTGGAGGAAGAGGAAGAGGAAGAGGAGGTGGTGGTGTAGGAGGAGGCTACGGGTGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGCGGGGACAGCCCACTCAGCCGTGGAGGCCCTCCAATCCTGTCCAGCAACCGTCATCAAATCTGGTGGGACAACCGGTTCAACGGTGCATTCCCAACCCGGTCCAACAACCACAACATCCACCAATCGCGCCGGCAACAGATGCTACGGTGGAGTTGCCAACTTCTTCTCATCATGTGAAAGAAGCTGGGGACAAGCGTATTCCTATGAGAAGGCCGGACAAAGGTGGCACCAATGCTGTCAGATCTGTTCCACTTCGTGTGAATCATTTTCCTGTCAAGTTCAAGTCTGATGGGCTCAATATGCATTATGATGTTGATATTAAACCAGAGGCTCCGCCCAAGAAGGGTCGTGCAGTAAAGATATCAAAGTCCACTTCGTATATGATAAGGGAAAAGCTCTGTGTTGATCACCCCTCACAGTTTCCTGCATCAGAGATTGCTTATGATGGTGAGAAGAACATTTTTAGTGCTGTTGAGCTTCCCACTGGGAAATTTAAGGTGGAGATCTCTGGAGGAGAAGAGATGAAGGTTTGTTCGTTCATTGTCACTATAAATCTGGTGAAGCAACTTGAGCTTCAAAAGTTGAGTGATTACTTAAGCGGGGTACTCTCCTTTGTTCCCCGTGATATATTACAAGGTATGGATGTGGTAATGAAGGAGAATCCTGCTAGACATATGATATCTTCTGGTCGGAGCTTTTACCAATTTAAAGACTCAGGAAAAGACGAGCTTGGATACGGTATTATAGCTTCTAGAGGATTTCAACATAGTCTCAAACCCACTGCCCAGGGTCTATCCTTGTGCTTGGACTACTCGGTTGTGCCATTTTTTAATCCAATTTCGGTTTTAGAGTTCCTAAAGGAGCATGTTTGTGACTTCTCTTTACGAGAGTTTAAGAGATACAGGAGTGAGGTTGAGGCTGCCTTAAAGGGATATAAAGTTAGAGTGACTCACCGTAATACGGGTCAAAAATTCATTGTTGCAGGTTTAACTAGTGAAGACACGCGAAACCTGTCATTTCTTCCTGAAGATCCAGAAGGCAATGTTTTGCCAAAGAAAGTAATGCTTGTTGATTATTTCTATGAAAAGTATGGCAAGGATATCGAGAACCAGGATATTCCCTGCTTAGATGTGGGAAAAAACAATAGGAAGAATTATGTACCAATGGAGTTCTGCATCTTGGTTGAGGGGCAGAGGTATACAAAAGAGATTTTGGATAAAGAGGCTGCTAAGAGGCTGAAACATGTGCAACTTCCTACACCAGTTGTCAGAGAAAGCAAAATATGTGAAATGATGCAGGCAAACGATGGACCATGCGGGGGAGGTATCATTGACAGTTTTGGCATTGGTGTAAGCAAGAACATGACAGAAGTTGCAGGACGAGTCATTGAGCCGCCAGAGTTGAAGCTAGGAGGCAAGCTGAACAAGATAACTGTGGAAAGGGACAGATGCCAGTGGAATTTGGTTGGAAAAATGGTCGTGAAAGGCATACCAGTTGACCATTGGGCTGTGGTGGACTTCAGTGGGCAGGAGCAGTACAACAGGCAGAATACCAATCAGTTTATTTCAAGATTTATTAGGCGGTGTGAAAAGTTGGGAATCCAAACGAAGAATCCTCTTTTCTGTGAAACTGCCAGCATGCATGCCTTCAGAGTTTTCCCTGTGCTACGGGAGCTGCTCGACAAGGTTTACAAAAAAGCAAGATGCCAATTACAAATTCTTGTGTGTGTCATGGCTAGGAAGGATGCTGGCTATGGATATCTTAAGTGGTTTGCTGAGACCAAATTGGGGATGGTTACTCAGTGTTGTTTGTCCCGCCCCGCCAACAAAGTCAGTGATCACCATCTTGCCAACCTTGCTCTCAAGTTGAATGCTAAGCTAGGGGGTAGCAATGTAGAACTTATAAAACGACTTCCACGGTTTGAAGGTGAAGGGCATGTGATGTTTATTGGTGCTGATGTCAATCACCCTGGCTCTCAGAACACAACTAGTCCATCAATAGCAGCTGTTGTTGCCACAGTGAATTGGCCTGCAGCAAACCGCTATGCAGCTCGAATTCGCCCACAAGCCCATCGAATGGAGAAAATTCAGAATTTTGGGGCAATGTGCCTGGAGCTTGTTGAGACTTATGTTCAGGCAAATAAAGTCAAGCCAGAGAAGATCGTGGTGTTCCGTGATGGTGTAAGTGAGGGCCAATTTGACATGGTTCTGAATGAAGAATTACTTGATCTCAAGAGAGCAATCCAGGGGGAAAATTACTGCCCGACCATCACTCTTATTGTGGCCCGCAAGAGACACCTAACACGTTTGTTTCCTAAGGTAAATGATGGGAGCTTTAATGGGAATGTGCCTCCAGGCACTGTTGTGGACACAACAGTGGTCCACCTATCTGAGTTCGACTTCTATCTTTGCAGCCACTATGGTACACTTGGGACAAGCAAACCCACGCACTATCATGTCCTATACGATGAGCACAGGTTTAGTTCTGACCAGATCCAGAAGCTTACCTATAACTTGTGTTTCACCTTTGCTCGGTGTACAAAACCCGTCTCGCTGGTCCCCCCAGTGTACTATGCTGACCTCGCTGCCTATAGAGGAAGGTTGTACTATGATGCAATTGTGGCGGAGGCTGGAGCTTCAGCTGCAACTTCATCATCAGTTGCCTCATCATCATCGTCGTCTGGAGCTTGGCTTAATGAGAGGCTTTACCGTCTGCATGGTGCTCTGGAGAACATGATGTTTTTCATCTGA 2847 0.4605 MEGRGGRGRGRGGGGVGGGYGWRGRGRGRGRGRGQPTQPWRPSNPVQQPSSNLVGQPVQRCIPNPVQQPQHPPIAPATDATVELPTSSHHVKEAGDKRIPMRRPDKGGTNAVRSVPLRVNHFPVKFKSDGLNMHYDVDIKPEAPPKKGRAVKISKSTSYMIREKLCVDHPSQFPASEIAYDGEKNIFSAVELPTGKFKVEISGGEEMKVCSFIVTINLVKQLELQKLSDYLSGVLSFVPRDILQGMDVVMKENPARHMISSGRSFYQFKDSGKDELGYGIIASRGFQHSLKPTAQGLSLCLDYSVVPFFNPISVLEFLKEHVCDFSLREFKRYRSEVEAALKGYKVRVTHRNTGQKFIVAGLTSEDTRNLSFLPEDPEGNVLPKKVMLVDYFYEKYGKDIENQDIPCLDVGKNNRKNYVPMEFCILVEGQRYTKEILDKEAAKRLKHVQLPTPVVRESKICEMMQANDGPCGGGIIDSFGIGVSKNMTEVAGRVIEPPELKLGGKLNKITVERDRCQWNLVGKMVVKGIPVDHWAVVDFSGQEQYNRQNTNQFISRFIRRCEKLGIQTKNPLFCETASMHAFRVFPVLRELLDKVYKKARCQLQILVCVMARKDAGYGYLKWFAETKLGMVTQCCLSRPANKVSDHHLANLALKLNAKLGGSNVELIKRLPRFEGEGHVMFIGADVNHPGSQNTTSPSIAAVVATVNWPAANRYAARIRPQAHRMEKIQNFGAMCLELVETYVQANKVKPEKIVVFRDGVSEGQFDMVLNEELLDLKRAIQGENYCPTITLIVARKRHLTRLFPKVNDGSFNGNVPPGTVVDTTVVHLSEFDFYLCSHYGTLGTSKPTHYHVLYDEHRFSSDQIQKLTYNLCFTFARCTKPVSLVPPVYYADLAAYRGRLYYDAIVAEAGASAATSSSVASSSSSSGAWLNERLYRLHGALENMMFFI* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0917 948 ProSiteProfiles Piwi domain profile. 605 903 IPR003165 GO:0003676
Vvi10g0917 948 SMART Piwi_a_2 605 903 IPR003165 GO:0003676
Vvi10g0917 948 FunFam Protein argonaute 7 306 432 - -
Vvi10g0917 948 Gene3D - 494 667 - -
Vvi10g0917 948 MobiDBLite consensus disorder prediction 1 111 - -
Vvi10g0917 948 Pfam PAZ domain 331 440 IPR003100 GO:0005515
Vvi10g0917 948 Pfam Piwi domain 606 900 IPR003165 GO:0003676
Vvi10g0917 948 Pfam N-terminal domain of argonaute 113 250 IPR032474 -
Vvi10g0917 948 ProSiteProfiles PAZ domain profile. 312 428 IPR003100 GO:0005515
Vvi10g0917 948 Pfam Argonaute linker 1 domain 261 309 IPR014811 -
Vvi10g0917 948 Gene3D - 675 948 IPR036397 GO:0003676
Vvi10g0917 948 Gene3D paz domain 307 432 - -
Vvi10g0917 948 MobiDBLite consensus disorder prediction 37 65 - -
Vvi10g0917 948 MobiDBLite consensus disorder prediction 89 104 - -
Vvi10g0917 948 CDD PAZ_argonaute_like 311 427 - -
Vvi10g0917 948 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 112 904 - -
Vvi10g0917 948 SUPERFAMILY Ribonuclease H-like 600 903 IPR012337 -
Vvi10g0917 948 SUPERFAMILY PAZ domain 307 468 IPR036085 GO:0005515
Vvi10g0917 948 Pfam Mid domain of argonaute 517 569 IPR032473 -
Vvi10g0917 948 SMART DUF1785_2 259 311 IPR014811 -
Vvi10g0917 948 CDD Piwi_ago-like 475 902 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0917 Vvi-Chr10 15146900 15150823 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0917 78 947 Eukaryotic Initiation Factors Gene Family AT1G48410 35.909 4.87e-164 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0917 K11593 - vvi:100251084 1805.8