Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0915 ATGGAGGGTCGTGGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGATGGTGGTGGAGGCGGCTCCGGATGGAGAGGGAGAGGGAGAGGGAGAGGGTGGGGACAGCCCACTCAGCCGTGGAGGCCCTCCAATCCGGTCCAGCAACCGTCATCAAATCCGGTAGGACAGCCGGTTCAACGGTGGGTTCCCAACCCGGTCCAACAACCACAACCTCCAACAATCGCGCCGGCAACAGCTGCTCCGGTCGGACAGCCGGTTCAACTGTGGGTTCCCAACCCGGTCCAACAACCACAACGTCCAACATTCGTGCCGGCAACAGCTGCTACGGTGGAGTTGCCGACTTCTTCTCATCATGACAAAGAAGCTGGGGACAAGCGTATTCCTATGAGAAGGCCGGACAAAGGTGGCACCAATGCTGTCAGATCTGTTTCACTTCGTGTGAATCATTTTCCTGTCAAGTTCAAGTCTAATAGGCTCATAATGCATTATGATGTTGATATTAAACCAGAGGCTCCACCCAAGGGTCGTGCAGTAAAGATATCAAAGGCCACTTTGTATATGATACGAGAAAAGCTGTGTGTTGATCACCCCTCACAGTTTCCTACATCAAAGATTGCTTATGATGGTGAGAAGAACATTTTTAGTGCTGTTGAGCTTCCCACTGGGAAATTTAAGGTGGAGATCTCTGGAGGAGAAGAGATGAAGGTTTGTTCGTTCATTGTCACTATAAATCTGGTGAAGCAACTTGAGCTTCAAAAGTTGAGTGATTACTTAAGCGGGGTACTCTCCTTTGTTCCCCGTGATATATTACAAGGTATGGATGTGGTAATGAAGGAGAATCCTGCTAGACATATGATATCTTCTGGTCGGAGCTTTTACCAATTTAAAGACTCAGGAAAAGACGAGCTTGGATATGGTATTATAGCTTCTAGAGGATTTCAACATAGTCTCAAACCCACTGCCCAGGGTCTATCCTTGTGCTTGGACTACTCAGTTGTGCCATTTTTTAATCCAATTTCGGTTTTAGAGTTCCTAAAGGAGCATGTTCGTGGCTTCTCCTTACGAGAGTTTAAGAGATACAGGAGTAAGGTTGAGGCTACCTTAAAGGGATTGAAAGTTAGAGTGACTCACCGTAATACAGGTCAAAAATTCATTATTGCAGGTTTAACTAGTCAAGACACGCAAAATCTGTCATTTCTTGCTGAAGATCCAGAACGCAAAGTTTTGTCAAAGAAAGTAATGCTTGTTGATTATTTCTATGAAAAGTATGGCAAGGATATTGTGCACAAGGATATTCCCTGCTTAGATGTGGGAAAAAACAATAGGAATAACTATGTACCAATGGAATTCTGCACTTTGGTTGAGGGGCAGAGGTATACAAAAGAGATTTTGGATAAAGATGCTGCTCAGGGGCTGAAACGTGAGCAACTTCCTACACCAGTTGTTAGAGAAAGCAAAATATGTGCAATGGTGCAGGCAAACGATGGACCATGCGGGGGAGGTATCATTGACAGTTTTGGCATTGATGTAAACAAGAACATGACAGCACTTGCAGGACGAGTCATTGGGCCACCAGAGTTGAAGTTAGGAGACCCTTCCGAGGGCAAGGTGAACAAGTTAACTGTGGATAAGGACAAATGCCAGTGGAATTTGGTTGGAAAATTGGTCGTGAAAGGCATACCAGTTGACCACTGGGCTGTGGTGGACTTCACTGCGTACGAGCAGTACAACAGGCTGAATACCGGGCAGTTTATTTCAGGATTTATTAGGCGGTGTGGAAAATTAGGAATCCAAATGCGGAATCCTCTTTTCTGTGAAACTGCCAACATGTATGCCTTCAGAGAATTCCCTGTGCTACAGGAGCTGCTCGACAAGGTTTACAAAAAAGCAAGATGCCAATTACAAATTCTTGTGTGTGTCATGGCTAGGAGGGATGCTGGCTATGGATATCTTAAGTGGTTCTCTGAGACCAGATTGGGGATGGTTACTCAGTGTTGTTTGTCCAGCCCCGCCAACAAAGCCAGTGATCAGTATCTTGCCAATCTTGCTCTCAAGTTGAATGCTAAGCTAGGGGGCAGCAATGTAGAGCTTATAGAACGACTTCCACGGTTTGAAGGTGAAGGACATGTGATGTTTATTGGTGCTGATGTCAATCACCCAGGCTCTCAGAACACAACTAGTCCATCAATAGCAGCTGTTGTTGCCACAGTGAATTGGCCTGCAGCAAACCGCTATGCAGCTCGAATTCGCCCACAAGCCCATCGAATGGAGAAGATTCAGAATTTTGGGGCAATGTGCCTGGAGCTTGTTGAGGCTTATGTTCAGGCAAATAAAGTCAAGCCAGAGAAGATCGTGGTGTTCCGTGATGGTGTAAGTGAGGGCCAATTTGACATGGTTCTGAACGAAGAATTACTTGATCTCAAGAGAGCAATCCAGGGGGGAAATTACTGCCCGACCATCACTCTTATTGTGGCCCGGAAGAGACACCTAACCCGGTTGTTTCCTAAGGTAAATGATCGGAGCTTTAATGGGAATGTGCCTCCAGGCACTGTTGTGGACACAACAGTGGTCCACCTATCTGAGTTCGACTTCTATCTTTGCAGCCACTATGGTACACTTGGGACAAGCAAACCCACGCACTATCATGTCCTACACGATGAGCACAGGTTTAGTTCTGACCAGATCCAGAAGCTTATCTATAACTTGTGTTTCACCTTTGCTCGGTGTACAAAACCTGTCTCGCTGGTCCCACCAGTGTACTATGCTGACCTTGCTGCCTATAGAGGAAGGCTGTACTATGATGCAATTGTGGCAGAGGTTGGAGCTTCAGCTGCAACTTCATCATCAGTTGCCTCACCATCATCATCATCGGCTGGAGCTTGGCTCAATGACAGGCTTTACCGTCTGCATGGTGCTCTGGAGAACATGATGTTTTTCATCTGA 2940 0.4643 MEGRGGRGRGRGRGDGGGGGSGWRGRGRGRGWGQPTQPWRPSNPVQQPSSNPVGQPVQRWVPNPVQQPQPPTIAPATAAPVGQPVQLWVPNPVQQPQRPTFVPATAATVELPTSSHHDKEAGDKRIPMRRPDKGGTNAVRSVSLRVNHFPVKFKSNRLIMHYDVDIKPEAPPKGRAVKISKATLYMIREKLCVDHPSQFPTSKIAYDGEKNIFSAVELPTGKFKVEISGGEEMKVCSFIVTINLVKQLELQKLSDYLSGVLSFVPRDILQGMDVVMKENPARHMISSGRSFYQFKDSGKDELGYGIIASRGFQHSLKPTAQGLSLCLDYSVVPFFNPISVLEFLKEHVRGFSLREFKRYRSKVEATLKGLKVRVTHRNTGQKFIIAGLTSQDTQNLSFLAEDPERKVLSKKVMLVDYFYEKYGKDIVHKDIPCLDVGKNNRNNYVPMEFCTLVEGQRYTKEILDKDAAQGLKREQLPTPVVRESKICAMVQANDGPCGGGIIDSFGIDVNKNMTALAGRVIGPPELKLGDPSEGKVNKLTVDKDKCQWNLVGKLVVKGIPVDHWAVVDFTAYEQYNRLNTGQFISGFIRRCGKLGIQMRNPLFCETANMYAFREFPVLQELLDKVYKKARCQLQILVCVMARRDAGYGYLKWFSETRLGMVTQCCLSSPANKASDQYLANLALKLNAKLGGSNVELIERLPRFEGEGHVMFIGADVNHPGSQNTTSPSIAAVVATVNWPAANRYAARIRPQAHRMEKIQNFGAMCLELVEAYVQANKVKPEKIVVFRDGVSEGQFDMVLNEELLDLKRAIQGGNYCPTITLIVARKRHLTRLFPKVNDRSFNGNVPPGTVVDTTVVHLSEFDFYLCSHYGTLGTSKPTHYHVLHDEHRFSSDQIQKLIYNLCFTFARCTKPVSLVPPVYYADLAAYRGRLYYDAIVAEVGASAATSSSVASPSSSSAGAWLNDRLYRLHGALENMMFFI* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0915 979 Gene3D - 705 979 IPR036397 GO:0003676
Vvi10g0915 979 FunFam Protein argonaute 7 332 458 - -
Vvi10g0915 979 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 139 934 - -
Vvi10g0915 979 MobiDBLite consensus disorder prediction 113 136 - -
Vvi10g0915 979 MobiDBLite consensus disorder prediction 113 131 - -
Vvi10g0915 979 CDD PAZ_argonaute_like 337 453 - -
Vvi10g0915 979 Pfam PAZ domain 357 466 IPR003100 GO:0005515
Vvi10g0915 979 Gene3D - 520 697 - -
Vvi10g0915 979 SUPERFAMILY Ribonuclease H-like 629 933 IPR012337 -
Vvi10g0915 979 Pfam Argonaute linker 1 domain 287 335 IPR014811 -
Vvi10g0915 979 Gene3D paz domain 333 458 - -
Vvi10g0915 979 MobiDBLite consensus disorder prediction 63 77 - -
Vvi10g0915 979 Pfam N-terminal domain of argonaute 140 276 IPR032474 -
Vvi10g0915 979 SUPERFAMILY PAZ domain 333 493 IPR036085 GO:0005515
Vvi10g0915 979 SMART Piwi_a_2 635 933 IPR003165 GO:0003676
Vvi10g0915 979 SMART DUF1785_2 285 337 IPR014811 -
Vvi10g0915 979 MobiDBLite consensus disorder prediction 1 77 - -
Vvi10g0915 979 ProSiteProfiles Piwi domain profile. 635 933 IPR003165 GO:0003676
Vvi10g0915 979 MobiDBLite consensus disorder prediction 36 62 - -
Vvi10g0915 979 SMART PAZ_2_a_3 342 477 IPR003100 GO:0005515
Vvi10g0915 979 Pfam Piwi domain 636 930 IPR003165 GO:0003676
Vvi10g0915 979 ProSiteProfiles PAZ domain profile. 338 454 IPR003100 GO:0005515
Vvi10g0915 979 CDD Piwi_ago-like 501 932 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0915 Vvi-Chr10 15100708 15104854 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0915 23 946 Eukaryotic Initiation Factors Gene Family AT1G48410 35.707 5.84e-159 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0915 K11593 - vvi:100249360 1839.7