Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0912 ATGGAGGATCAGATATTTTTCGGTGATGTGTCTGCAAGGAATTTTGTTAGGGAGGTGAAATTGGAAGAGGATGAGGAGGATTTCCGGAGCTGTTGCGAAGATGAAGAAGAATGGAAGGATACTGAAGAATCAGTGAAGGAAGGTGCAAAGGATTTGAAGGAGGAACTCGATGAATTTTCAGTGAAGATGTTCTTCAAGGGCATGTCAATAGCTGAGGCTGGTGATTCTGGTTCTGGGCTTTCTGGAATAGGGGTGGTCATGGAAAGATCAGCCAGCGCTCCTACAATACAAGTGCAGAAAAAACTTGACTTTTATGTGGATGAATCCGTGGCTGACTATTTGGCTTTGATGGATGGTCTGATAGAGGCCATGCAGAATAACATTCGCCGTGTTTTTGCATTTACTGATTCCGAGATCTTATATGACCAGATTTCACATGCGGAGGAGGATGGGAATCCACTTTTGATGGCACTGAAGCAAAGGATCTTAGAATTTTCCAGTAATCTGGAAGCTTTTGTTCTGAATCTAATTCCCAGTAATGATCTTGAGAGGCCATTGCAATTAGCCCAAGTGGCAATTGGGATTGTTTCTTCACCTTCCAAGGGAGATGGATCACTGGAAAACTGTTCTATCTGTTGTGAGGACAAACCTTCGCCAATGATGATCACAATGAAATGTTCACACAAATTCTGTTCCCACTGCATGAAAACCTATGTTGATGGAAAAGTACAGTCCTCTCAGGTCCCCATTAGATGTCCTCAGTTGAGATGTAAATATTTCATCTCTACTACTGAGTGCAGATCTTTTCTTCCAGTCACTTGCTTTGAATCTTTGGAGAGAGCACTTGCAGAAGCAAATGTTCTCAATTCGGAGAAAATCTACTGCCCCTTTCCAAATTGTTCAGTCTTGCTTGATCCACGAGAGTGTTTGTCAGCTAGGGCAAGTTCATCAAGTCAGTCAGATAACAGTTGTGTTGAGTGCCCAGTTTGTCAGAGATTTATCTGTGTTGATTGTGGAGTTCCTTGGCATTCTTCAATGAGCTGTGAAGAGTATCAAAGTCTCCCCTTGGAGGAAAGAGATGCTGGGGACATTACTTTACATCGCCTTGCACAAAATAAAAGGTGGAGGCGTTGCCAGCAATGCCGGAGGATGATTGAGCTCACACAAGGGTGCTATCACATGACCTGCTGGTGTGGGCATGAGTTCTGCTATTCTTGTGGTGCGGAGTACAGAGACGGACAACAGACCTGTCAATGTGCATTTTGGGACGAAGAGAACTCTGAAGACTTGATGAGCCACTCGATCCAAGAATCTGAACAATGGGAATGGGACTCCTTCAATTCACTTCCCATGACCATGGGCATGGACGCATACTCAGATCAGGAGAGATCTCAGCTGGCACTGATCCAGAGGTTCCTTGCTGGGGGTTTCAGTCTGAGCGACCATCACCCATACCAATCCCCACCACGTTGTACAGACTCGTATGTTGATGCCATGAAGGACCTCCATCAGCTTCCTTGGCTGGAGAGGTTTGTGTCAGTAATAAGTGACAACTACTATGAAGACTATATCCAATGA 1578 0.4468 MEDQIFFGDVSARNFVREVKLEEDEEDFRSCCEDEEEWKDTEESVKEGAKDLKEELDEFSVKMFFKGMSIAEAGDSGSGLSGIGVVMERSASAPTIQVQKKLDFYVDESVADYLALMDGLIEAMQNNIRRVFAFTDSEILYDQISHAEEDGNPLLMALKQRILEFSSNLEAFVLNLIPSNDLERPLQLAQVAIGIVSSPSKGDGSLENCSICCEDKPSPMMITMKCSHKFCSHCMKTYVDGKVQSSQVPIRCPQLRCKYFISTTECRSFLPVTCFESLERALAEANVLNSEKIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCQRFICVDCGVPWHSSMSCEEYQSLPLEERDAGDITLHRLAQNKRWRRCQQCRRMIELTQGCYHMTCWCGHEFCYSCGAEYRDGQQTCQCAFWDEENSEDLMSHSIQESEQWEWDSFNSLPMTMGMDAYSDQERSQLALIQRFLAGGFSLSDHHPYQSPPRCTDSYVDAMKDLHQLPWLERFVSVISDNYYEDYIQ* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0912 525 Pfam Zinc finger, C3HC4 type (RING finger) 209 253 IPR018957 GO:0046872
Vvi10g0912 525 Pfam IBR domain, a half RING-finger domain 369 417 IPR002867 GO:0008270
Vvi10g0912 525 Pfam IBR domain, a half RING-finger domain 287 348 IPR002867 GO:0008270
Vvi10g0912 525 SUPERFAMILY RING/U-box 281 352 - -
Vvi10g0912 525 CDD BRcat_RBR_unk 290 351 - -
Vvi10g0912 525 Gene3D - 346 471 - -
Vvi10g0912 525 FunFam RBR-type E3 ubiquitin transferase 204 289 - -
Vvi10g0912 525 Pfam Reverse transcriptase-like 76 178 IPR002156 GO:0003676|GO:0004523
Vvi10g0912 525 SUPERFAMILY RING/U-box 204 285 - -
Vvi10g0912 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 287 IPR013083 -
Vvi10g0912 525 SUPERFAMILY RING/U-box 361 425 - -
Vvi10g0912 525 ProSiteProfiles Zinc finger RING-type profile. 209 256 IPR001841 -
Vvi10g0912 525 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 89 437 IPR031127 GO:0004842|GO:0016567
Vvi10g0912 525 SMART ring_2 209 255 IPR001841 -
Vvi10g0912 525 SMART ring_2 378 419 IPR001841 -
Vvi10g0912 525 Gene3D - 58 195 IPR036397 GO:0003676
Vvi10g0912 525 FunFam RBR-type E3 ubiquitin transferase 346 473 - -
Vvi10g0912 525 ProSiteProfiles TRIAD supradomain profile. 205 423 IPR044066 -
Vvi10g0912 525 SUPERFAMILY Ribonuclease H-like 77 179 IPR012337 -
Vvi10g0912 525 ProSitePatterns Zinc finger RING-type signature. 226 235 IPR017907 -
Vvi10g0912 525 CDD Rcat_RBR_unk 384 410 - -
Vvi10g0912 525 SMART ibrneu5 358 417 IPR002867 GO:0008270
Vvi10g0912 525 SMART ibrneu5 276 348 IPR002867 GO:0008270
Vvi10g0912 525 FunFam RBR-type E3 ubiquitin transferase 61 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0912 Vvi-Chr10 15018002 15022216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0912 60 408 C3H Transcription Factor Family AT2G19610 23.889 3.35e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0912 - - vvi:100263135 1065.06