Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0905 ATGTGTGTATTTATATCACAAAAACATACCCCGAGAGAGAGAGAGAGAGAGAGAGAGAGCACTTCTAAAATGGCTTCCTCTTTGTATGTTTATCTTCTTGTACTGGTGTTGGGTGGGGCTCTGCAGGCATCTGTAGATGGCCACCTCAGCCATGAAATCTTAGCCCGACAAAAGGCCGATCGAGTCAAAAAGCTTCCCGGGCAGCCTGAGGTCGGGTTCAGGCAATATGCAGGCTATGTTACAGTCAATGAAAGCCATGGAAGAGCACTGTTTTATTGGTTCTTTGAAGCCACCCAAAACCCTCATCAGAAGCCTCTCCTCCTATGGCTCAATGGAGGACCAGGATGTTCATCCATTGGGTTTGGAGCCACTGAGGAACTTGGCCCTTTCTTCCCTAGAAGGGACGGAAAGCTAAAGTTCAATCCTCACACTTGGAACAAAGCTGCAAATTTACTATTTGTTGAATCTCCGGTGGGGGTTGGATTTTCCTACACCAATACGAGTAGCGACATTGATCAACTTGGGGACACAATTACAGCAAAGGATTCCTACGCCTTTCTCATCCATTGGTTCAAAAGGTTCCCACAATTCAAACCCCATGATTTCTACATCGCTGGAGAAAGTTATGCAGGGCACTATGTTCCTCAACTCGCCGAAGTTATTTACGATCATAACAAGCATGTTTCCAAAAAGCTTCATATAAACTTAAAGGGATTCATGATCGGGAATGCGTTATTGGACGACGACACGGATCAGAGGGGTATGGTGAGTTACGCATGGGATCATGCGGTGATATCGGATCGTGTGTTCTTTGACATCAAGAAAGCTTGCAACTTCAGCGCGGAACCAGTCACCGAAGAATGCAATATTGCTCTCGGCAAATACTTCGAAGTTTACGAGATCATAGACATGTACAGCTTATACGCTCCTACTTGTGAGGATGACGCCACCTCCTCCACCACCTCCTTCGTCGCTAGGCAGCTGCCTCTCATCCGTGGCAATGTCGCTCCCAAAACATTTTCCAAATTTCCAGCGTGGCATAAGAGACCAACGGGGTACGACCCATGTGCATCCGACTACACCACGGTCTACTTAAACAGGCCAGAAGTTCAAGCAGCGCTTCATGCCAATGTCACCAACATTCCCTATCCATGGACTCATTGCAGTAACAACATTTCATTTTGGAACGATGCCCCGGCTTCAATCCTTCCCATCATCAAAAAGCTTGTAGATGGAGGCCTTCGCATATGGGTTTTCAGTGGTGACACCGACGGTAGAATTCCGGTATCCTCAACTAGATTAACCTTGAGAAAGCTTGGATTGAAAACTATCCAAGAGTGGACTCCATGGTACACCAGCCACGAGGTTGGTGGGTGGACAATTGAATATGATGGGCTGACGTTTGTGACAGTTAGAGGTGCTGGGCATGAAGTTCCAACTTTTGCACCCAAGCAAGCTTTTCAACTAATTAGGCACTTCTTGGACAATGAGAAATTGCCATCTACACCTATTTAA 1515 0.4647 MCVFISQKHTPRERERERESTSKMASSLYVYLLVLVLGGALQASVDGHLSHEILARQKADRVKKLPGQPEVGFRQYAGYVTVNESHGRALFYWFFEATQNPHQKPLLLWLNGGPGCSSIGFGATEELGPFFPRRDGKLKFNPHTWNKAANLLFVESPVGVGFSYTNTSSDIDQLGDTITAKDSYAFLIHWFKRFPQFKPHDFYIAGESYAGHYVPQLAEVIYDHNKHVSKKLHINLKGFMIGNALLDDDTDQRGMVSYAWDHAVISDRVFFDIKKACNFSAEPVTEECNIALGKYFEVYEIIDMYSLYAPTCEDDATSSTTSFVARQLPLIRGNVAPKTFSKFPAWHKRPTGYDPCASDYTTVYLNRPEVQAALHANVTNIPYPWTHCSNNISFWNDAPASILPIIKKLVDGGLRIWVFSGDTDGRIPVSSTRLTLRKLGLKTIQEWTPWYTSHEVGGWTIEYDGLTFVTVRGAGHEVPTFAPKQAFQLIRHFLDNEKLPSTPI* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0905 504 ProSitePatterns Serine carboxypeptidases, serine active site. 204 211 IPR018202 GO:0004185
Vvi10g0905 504 FunFam Carboxypeptidase 402 496 - -
Vvi10g0905 504 MobiDBLite consensus disorder prediction 1 20 - -
Vvi10g0905 504 FunFam Carboxypeptidase 352 499 - -
Vvi10g0905 504 ProSitePatterns Serine carboxypeptidases, histidine active site. 466 483 IPR033124 GO:0004185
Vvi10g0905 504 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 60 483 IPR001563 GO:0004185|GO:0006508
Vvi10g0905 504 Gene3D - 356 393 - -
Vvi10g0905 504 Gene3D alpha/beta hydrolase 56 314 IPR029058 -
Vvi10g0905 504 SUPERFAMILY alpha/beta-Hydrolases 58 501 IPR029058 -
Vvi10g0905 504 Gene3D - 402 495 - -
Vvi10g0905 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 141 153 IPR001563 GO:0004185|GO:0006508
Vvi10g0905 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 190 215 IPR001563 GO:0004185|GO:0006508
Vvi10g0905 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 466 479 IPR001563 GO:0004185|GO:0006508
Vvi10g0905 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 154 164 IPR001563 GO:0004185|GO:0006508
Vvi10g0905 504 FunFam Carboxypeptidase 56 314 - -
Vvi10g0905 504 Pfam Serine carboxypeptidase 67 496 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0905 Vvi-Chr10 14726735 14731573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0905 364 499 Calmodulin-binding Proteins AT2G22960 27.007 1.05e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0905 K16297 - vvi:100257982 1011.91