Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0881 ATGGGGGACGACGGAAGCTCTGGTTCGCCGGATGGAGGGAGTGAGAGGAAGCCTCCGAGGTCGGAGGAAGCACCGGAGAATGGCGGAGGAGGAGAGGAGGTTCTGAGGGTGGAAGGAGACGGAGGAGTTGTGCCGAAGAAGAGGCGTGGGCGGAAGCCGGGGAAGAAGGCGGAAGTGAAGAGGAAAGGGAAAGGAAGTGGTGTTGGTGGTTGTTCTGAAGGTGGAGGAGGTCCGACGAGGAAGCGCGGTCGGTCTAAGAAGGATGTGAAAACTGGGGAGAATGTGGATTTGGCGGCGGAGAAGGGCGGCGAAAATGGCGATAAAGGCGTGGGAAGTGGTGGTTCTGGAGATGAAGGAGGTGGAAAAGCTGGAGAAGATGTAGAATCGGGAGAAAATCAGGATATGCAGATTGCGAAGGAGGGAGCAAATGGTAGGGAAGGCCTTCAAAACTGTGGTCGTGAAGACGAAGGAAGTGAAAAAGCTGGAGAAGATGTGAAATCTGGGGAGAATGAGGATTTGCTGGCGGAGAAAAGTAGAGAAAAAGATGAGAAAGGCAAAAGTGGTAGTGGGAATGAAAGTTCAGAAGCTCAAGAAGATTTAAAACACGTGGAAATTGAGGATGTTTTGATGGAGAAAAGTGGAGAAGGAGGTGAGAAAGGCAAAGAAACTAATAGTTCTGAAAATGTTGGAGTCTTGGTGAGGAGGCGCGGCCGAAAACCAAAAAGTGTGATATTGCAGGAGATTGAGCAAAATGAGAATGGGATAGAGAGGGGTGTTGATGAAAATGGAGGTGTTACCTCAAGGAGGTGTAGCCTAAGGCCAAGAAAAGAAGTGAAATCAGTGGGAAATTATGATCTCCAGATTGAGAAAGATGAAGAAGATGGTGAAGAAAACGTAGAAAGTGGGGTTTCAGATGATGGAGTTGCGGTAAAGAAGAGAGGTAAAAAAAAGGTGAAAAAAGGTAGGAAAATGGGTGGCATTGGTGATGAAGATAAACAACCTTCTGTGAAGAGGCAACGGGGAAGAACTAGAACAAAGAAGGAAGATTTTGGAGACAAGGATTCAATGGCAGTGAAAGGTGAAGAAAGTGATGATTTAGACACTGAAGATGGTGATGAGATGACTCGAAGAGGACCTAAGAAGAAGAGAGGGAAAAAGAGTACAAAAGGGCCTGCGGTTCCTAAGAATGATATGAAAACTGAGGATTTTGGAAATGAAAATGGTGAAGAAAACTCTTCCAAGAACGAGACTGAGCCAAGGACAATCACACAGAAGAGAAAGAAGTCAAAAGATGAAGCATTGGGGAAGTTGGATGATGAGAAGGAGAAAGAGCCCTCAGAAAGGAGCTTGATGAGTGATGGTTATTGCCTGAGGGCTCCCAAAGCTCAGTCTTCAGTACCTCAACAACTTTCACGTAAGGAGAAGATGGATCCAAAATGGATTGAAGAGGTGTCTTTAATGTGCCATCAATGTCAGAGAAATGACAAAGGAAGAGTTGTCCGCTGCCGAAAATGCAAGAGGAAGCGATTTTGTATCCCCTGCTTAGAAACTTGGTATCCTCACATGTCAGAGGAGGCAATTGCTGAGTCTTGCCCGTTTTGTAGTGGGAACTGCAATTGCAAAGCATGCTTAAGATGTGATGGATCCCTTAAAAAAATGGCTGAACTGGACTATTTGAAAATGAAGCTCAGTGATGAGGAGAAATTTAAGCACTCTAGGTATTTGCTACAAGCAGTTGTCCCGTTTTTGAAACAATTTAATCAAGAACAGATGCTTGAGAAGGAGATTGAGGCTAAGATACAAGGATTATCTCCATCAGAGCTAAAGATACAGCGTGTAGTTTGCAACAAGAATGAGCGTGCATACTGTGACAACTGTAGAACTTCTATTGTTGACTTCCACAGAAGCTGTCCCAACTGTTCTTATGATCTCTGCCTTATTTGCTGCCGGGAGATTCGTGATGGCCACCTGCAGGGAGGTGAGGAGGAAGTGATTGTGCATGTTGACTCCCCAGGACTAGGCTACTTGCATGGTGATAAGTCTAGATTTCCTGAGTCTTCAAGGAGAAAGAGAAAATTGAATTTTCCTGCTAACGCTAGCCCTAAGGATCATGCTAAGTCAATGTCTGGGTGGGAAGCAAATAAAAATGGTAGCATCCCTTGCCCTCCAAAGAACTTGGGTGGTTGTGGGCAGGGACTACTAGAATTGAGATGTATGTTAGAGGAAAATTTTGTTTTGGGGTTGATAATGGAAGCAGAAGAAATAGCAAGCAGTAACAAACTTATGGATATTTCTGGAAACCCTCAACAGTGTTGCTCGTGTTTGAACTTTGCGGATGACAATGACACTGACAACAGTAAGTTAAGAAAAGGAGCTTCCCGAGATGATTCCAGTGATAACAATTTGTACTGCCCAAAAGCCACTGATATTCAGGATGAGGATTTAAAGCATTTCCAGTGGCATTGGCTCAGAGGCGAGCCAATAATTGTAAGAGATGTACTTGAAAATACATCTGGTCTGAGTTGGGAGCCAATGGTCATGTGGCGTGCATTTCGTCAGATTACAAATACCAATCATGCTCAACATTTGGAAGTGACAGCCATGGATTGCTTGGATTGGTGTGAGGTAGCAGTTAATATTCATCAATTTTTTAAAGGATATTCGGATGGTCGGTTTGATAGTTATAAGTGGCCTCAGATACTTAAATTGAAAGACTGGCCACCCTCTACTTTATTCAAGGAGCGCTTACCGCGCCATCATGCTGAATTTGTTAGCTGCCTTCCGTTTAAAGATTATACACATCCATTTGATGGCATTCTCAATCTTGCTGTCAAATTGCCAAAAGGGAGTCTACAGCCAGACTTGGGGCCCAAGACATATATAGCATATGGAGTTGCTCAGGAGCTGGGTCGTGGAGACTCTGTAACAAAGCTTCATTGTGATATGTCTGATGCAGTTAATGTTTTAACTCATACTGCTGAGGCAACCCTTCCATCTGATAATCTGGCTGAAATAGAAAAGTTGAAAGCACAGCATAGTGCCCAAGATCAGGAGGAGCATCTGGAAGATAGTCAGACAAAAAACCAAGATGTTGAGGAGAAGCAACCGTCACCATCCAGTGGTCCCCAAAGTATATCAGGAGGTTCTGAAAAGAATGAAGAAGCAGAAGTGGGTCAAGATGGAAGTAAGAAGATTAGTGGACCTTCTGCAATTTCAGGAAATAGGTTGGCAGGGGGGAAACCTGCAGAGGGAGGTGCTCTTTGGGACATTTTCCGTCGACAAGATGTTCCTAAGCTGCAGGAATATCTTAAGAAGCACTTTAGGCAATTCAGGCACATACATTGTTTTCCACTGCAGCAGGTTGTTCACCCTATTCATGACCAAACCTTTTACTTGACTCTTGAGCATAAAAGGAAGCTCAAGGATGAATATGGAATTGAACCATGGACTTTTGTCCAAAATCTCGGAGATGCAGTATTCATTCCTGCTGGTTGTCCTCATCAAGTTAGAAATTTAAAGTCATGTATAAAGGTTGCAGTTGATTTTGTCTCACCTGAAAATGTTGGTGAGTGCGTTCGATTGACTGAAGAATTTCGCACACTTCCCCAAAATCATAGGGCTAAAGAAGACAAATTGGAGGTGAAGAAAATGGTTATTCATGCAGTGTATAATGCTTTGAAGACTTTGAATCCGCAGAAGACAGTTGAGATAATGGGACCAGAAAAGAAAGTCAAGAAAACAAGACGAAAAAAGAGCCGGACACGTGGATGA 3771 0.4391 MGDDGSSGSPDGGSERKPPRSEEAPENGGGGEEVLRVEGDGGVVPKKRRGRKPGKKAEVKRKGKGSGVGGCSEGGGGPTRKRGRSKKDVKTGENVDLAAEKGGENGDKGVGSGGSGDEGGGKAGEDVESGENQDMQIAKEGANGREGLQNCGREDEGSEKAGEDVKSGENEDLLAEKSREKDEKGKSGSGNESSEAQEDLKHVEIEDVLMEKSGEGGEKGKETNSSENVGVLVRRRGRKPKSVILQEIEQNENGIERGVDENGGVTSRRCSLRPRKEVKSVGNYDLQIEKDEEDGEENVESGVSDDGVAVKKRGKKKVKKGRKMGGIGDEDKQPSVKRQRGRTRTKKEDFGDKDSMAVKGEESDDLDTEDGDEMTRRGPKKKRGKKSTKGPAVPKNDMKTEDFGNENGEENSSKNETEPRTITQKRKKSKDEALGKLDDEKEKEPSERSLMSDGYCLRAPKAQSSVPQQLSRKEKMDPKWIEEVSLMCHQCQRNDKGRVVRCRKCKRKRFCIPCLETWYPHMSEEAIAESCPFCSGNCNCKACLRCDGSLKKMAELDYLKMKLSDEEKFKHSRYLLQAVVPFLKQFNQEQMLEKEIEAKIQGLSPSELKIQRVVCNKNERAYCDNCRTSIVDFHRSCPNCSYDLCLICCREIRDGHLQGGEEEVIVHVDSPGLGYLHGDKSRFPESSRRKRKLNFPANASPKDHAKSMSGWEANKNGSIPCPPKNLGGCGQGLLELRCMLEENFVLGLIMEAEEIASSNKLMDISGNPQQCCSCLNFADDNDTDNSKLRKGASRDDSSDNNLYCPKATDIQDEDLKHFQWHWLRGEPIIVRDVLENTSGLSWEPMVMWRAFRQITNTNHAQHLEVTAMDCLDWCEVAVNIHQFFKGYSDGRFDSYKWPQILKLKDWPPSTLFKERLPRHHAEFVSCLPFKDYTHPFDGILNLAVKLPKGSLQPDLGPKTYIAYGVAQELGRGDSVTKLHCDMSDAVNVLTHTAEATLPSDNLAEIEKLKAQHSAQDQEEHLEDSQTKNQDVEEKQPSPSSGPQSISGGSEKNEEAEVGQDGSKKISGPSAISGNRLAGGKPAEGGALWDIFRRQDVPKLQEYLKKHFRQFRHIHCFPLQQVVHPIHDQTFYLTLEHKRKLKDEYGIEPWTFVQNLGDAVFIPAGCPHQVRNLKSCIKVAVDFVSPENVGECVRLTEEFRTLPQNHRAKEDKLEVKKMVIHAVYNALKTLNPQKTVEIMGPEKKVKKTRRKKSRTRG* 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0881 1256 MobiDBLite consensus disorder prediction 1031 1050 - -
Vvi10g0881 1256 Coils Coil 1014 1034 - -
Vvi10g0881 1256 MobiDBLite consensus disorder prediction 276 473 - -
Vvi10g0881 1256 MobiDBLite consensus disorder prediction 1 234 - -
Vvi10g0881 1256 MobiDBLite consensus disorder prediction 1010 1078 - -
Vvi10g0881 1256 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 484 549 IPR018866 -
Vvi10g0881 1256 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 180 1232 IPR045109 GO:0032454|GO:0033169
Vvi10g0881 1256 CDD cupin_RmlC-like 1123 1183 - -
Vvi10g0881 1256 SMART cupin_9 916 1199 IPR003347 -
Vvi10g0881 1256 MobiDBLite consensus disorder prediction 79 103 - -
Vvi10g0881 1256 ProSiteProfiles JmjC domain profile. 935 1199 IPR003347 -
Vvi10g0881 1256 MobiDBLite consensus disorder prediction 149 222 - -
Vvi10g0881 1256 MobiDBLite consensus disorder prediction 15 29 - -
Vvi10g0881 1256 MobiDBLite consensus disorder prediction 390 449 - -
Vvi10g0881 1256 MobiDBLite consensus disorder prediction 1010 1030 - -
Vvi10g0881 1256 ProSiteProfiles Zinc finger RING-type profile. 488 535 IPR001841 -
Vvi10g0881 1256 Gene3D Cupin 798 1208 - -
Vvi10g0881 1256 MobiDBLite consensus disorder prediction 323 362 - -
Vvi10g0881 1256 Pfam JmjC domain, hydroxylase 1086 1182 IPR003347 -
Vvi10g0881 1256 SUPERFAMILY Clavaminate synthase-like 811 1222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0881 Vvi-Chr10 14142704 14157354 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vvi10g0881 JmjC 1.1e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0881 K15601 - vvi:100261347 2328.13