Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0880 ATGGGTCGTGGAAAGATAGCAATCAGGAGGATTGAGAACCAAACAAGCAGGCAAGTCACCTTCTCAAAGCGCCGAGCAGGGCTGTTGAAGAAAACCCATGAACTTTCTGTGCTTTGTGATGTCCAGATCGGGCTCATCATCTTCTCAAGCACTGGGAAGATGTGCGAGTACTGCACTGAGCCATGGAGAATGGATCAGATAATTGAAAGGTACCAGAAGGTCACAGGGACTCGTATTCCAGAGCATGATAGCCGGGAACAAATATATAATGAGTTAACGAGGATGAGAAAAGAAACCAGTCGTCTTCAACGGAGTATGAGAGGCTACACAGGTGAGGATTTGAGTTCTATACCGTATGAAGACTTGGATCAACTTGAACAACAACTGGAACACTCAGCTGATAAAGTTCGAGCTAGGAAGAATCAACTGTTGCAGCAGCAGCTTGATAATTTACGCAGGAAGGAGCAAATGTTGGAAGAGGAAAACAGCAAGATGTACCACTGGATTAAGGAGAACCGAGCAGCCTTAGATTATCAACAGGCAGCCATAGAAGTGAAACCAGTGGAACATCATCACCAAATGCTTGATCAGTTTCCATTCTTTGGAGAAGAAGGACCCAATAGTGTGCTTCAGCTCTCTACCATCCACCCTCAGCTTCACCCATATGGCCTTCAGCTCACTCAACCCCACCTTCAAGATTCAAGTATTTAG 711 0.4543 MGRGKIAIRRIENQTSRQVTFSKRRAGLLKKTHELSVLCDVQIGLIIFSSTGKMCEYCTEPWRMDQIIERYQKVTGTRIPEHDSREQIYNELTRMRKETSRLQRSMRGYTGEDLSSIPYEDLDQLEQQLEHSADKVRARKNQLLQQQLDNLRRKEQMLEEENSKMYHWIKENRAALDYQQAAIEVKPVEHHHQMLDQFPFFGEEGPNSVLQLSTIHPQLHPYGLQLTQPHLQDSSI* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0880 236 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vvi10g0880 236 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Vvi10g0880 236 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi10g0880 236 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Vvi10g0880 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi10g0880 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Vvi10g0880 236 Pfam K-box region 81 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi10g0880 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi10g0880 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi10g0880 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi10g0880 236 Coils Coil 119 164 - -
Vvi10g0880 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi10g0880 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi10g0880 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0880 Vvi-Chr10 14128406 14133902 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0880 1 233 MADS-box Gene Family AT5G23260 54.065 1.93e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi10g0880 K-box 2.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0880 - - vvi:100244209 467.233