Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0876 ATGGAGTGGTGTTCCATTAATCCATGTAGGGTGTTGGTGGTTTCAGTGGTATTGTTATCATATAACATGCTCTTGATCTCATCACCTCCTGCTGCTGCTGCTACAACTGACGCACAGGTGGAGGCCGAGGCCGAAGCTCTCCGCAACTCCACTTGGTGGTGGTACATGGAAAACATTACTTCTCATCATTGCACATGGGACGGCATCACCTGCAACAGGGAGGGACATGTTATTCAGATTACCTATTCACATTACAATTCCCCACGTATCTCTGATTGTGGACTTGATGGTGAGCTACCTGTTTCACTGGGTAACCTCACTCTATTAGTATACTTATCCCTTAATTTCAATCGAATCAACGGTTCCATCCCTTCTGAAATTGGGAATTTAAAGAATCTAATTCATTTGGATTTGAGTTATAACTATTACCTCTCTGGTGCCATCCCTTCCTCTCTTGGATATTTGAAGAATCTTATTCATTTGGATTTGAGTCATTGCTATAGCCTCTATGGTGCCATCCCTTCCTCTCTTGGATATTTGAAGAATCTTATTCATTTGGATTTGAGTCATAACTCTGACCTCTATGGTGTCATTCCTTCCTCTCTTGGAAATTTAACCAACCTGGTATACTTATCCCTTAATTTCAATCGAATCAACGGTTCCATCCCTTCTGAAATTGGGAATTTAAAGAATCTAATTCATTTGGATTTGAGTTATAACTATTACCTCTCTGGTGCCATCCCTTCCTCTATTGGATATTTGAAGAATCTGATTCATTTGGATTTGGGTTCTAACTCTCTTTCCAGTGTCATTCCTTCCTCTCTTGGAAGTTTAACCAACCTGGAATACTTGTACCTTAATTTCAATCGAATCAACGGTTCCATCCCTTCTGAAATTGGGAATTTAAAAAATTTGGTTCAATTGTCCTTGAGTCATAATGCCCTTCTTGGTACTATTCCTTCATCTTTGGGTAATCTTATCAATTTGACTTATTTCCATCTCATCGACAATCAAATCCAGGGTCTCATCCCCTTGTCATTTGGTAATCTTACCAATTTGACTCATTTGTATCTTCGTTATAATCAAATCAATGGTTCCATCCCTCCTGTAATTTGGAATCTGAAGAATTTAATTCATCTCAGATTGGATCACAACAACCTTACCGGTGTTATTCCTTCTTTGGGCTATCTCATTCATTTAAATGTGTTCAACATTCGTAGAAATCGAATCAGAGGTCACATTCCTTCTAAGATAGGAAATTTGAATAATCTGACTAGCCTCGACCTTAGTGATAACTTGATCGATGGAAAGATACCTTCCCAGCTCCAAAATTTGAAGAGTTTAGAAAGCTTGAACCTCTCCCACAATAAACTCTCGGGTCACATTCCTCCTCTTTCTATATATATCCACAAAGGGTCATCCATTGATTTTTCACACAATGATTTTGAGGGTCATATACCCCATGAATTGCAGTTTGTATATCCACCAAGGGTTTTTGGCCACAATAAAGGTTTATGTGGTGAAAGGGAAGGCTTGCCTCATTGCAAAAGAGGACACAAAACTATTCTCATCATTTCTTTATCTACCATCTTGTTTCTTTCTTTTGTGGCCCTTGGGATTCTCTTGCTTTCACGGAAGACAAGAAGAAATCAAACCAAGGCAACTTCGACAAAAAATGGAGATATATTTTCAGTGTGGAACTATGATGGTAAGATTGCTTATGAAGATATCATTGAAGCAACAGAAGATTTCGATATCAAATATTGCATAGGTACTGGAGGTTATGGCAGTGTTTACAAGGCTCAATTGCCTACAGGTAATGTGGTAGCCTTGAAAAAGCTTCATGGATGGGAAAGAGATGAGGCAACATACTTGAAAAGTTTTCAAAATGAGGTGCAGGTTTTGTCAAAAATACAACATCGGAATATCATAAAACTTCACGGCTATTGTCTGCACAAAAGATGCATGTTTTTGATTTACAAGTACATGGAAAGAGGAAGCTTATACTGTGTATTGAGCAATGAAGTTGAAGCTTTGGAATTGGATTGGATTAAAAGGGTGAATGTAATCAAAAGCATAGTCCATGCTTTATGTTACATGCATCATGACTCTACTCCACCCATTATTCATAGGGATGTATCAAGTAACAATATTCTTTTGGACTTTAAACTGGACGCTTTTCTATCTGATTTTGGCACTGCTAGACTGCTACATCCTGATTCATCCAATCAAACTCTTCTTGCAGGCACTTATGGTTACATAGCACCAGAGCTTGCCTACACTATGGCTGTGACGGAAAAATGTGATGTTTACAGCTTTGGAGTGGTAGCGCTTGAGACAATGATGGGAAGGCATCCGAGAGAACTTTTCACCTTATTGTCTTCCTCATCAGCTCAAAACATAATGCTCACCGACATATTAGATTCACGTCTACCATCTCCTCAAGATCGACAAGTTGCTAGAGATGTAGTTCTTGTTGTGTGGTTGGCACTTAAATGCATACATTCTAATCCAAGATCTCGTCCAACGATGCAACACATCTCATCGAAGCTTCTTATTCAATCACCATTTCTTGAACCTTTTCATGGGATTTCACTTTGGCAACTAAATATTCAAGAAATATAA 2625 0.3867 MEWCSINPCRVLVVSVVLLSYNMLLISSPPAAAATTDAQVEAEAEALRNSTWWWYMENITSHHCTWDGITCNREGHVIQITYSHYNSPRISDCGLDGELPVSLGNLTLLVYLSLNFNRINGSIPSEIGNLKNLIHLDLSYNYYLSGAIPSSLGYLKNLIHLDLSHCYSLYGAIPSSLGYLKNLIHLDLSHNSDLYGVIPSSLGNLTNLVYLSLNFNRINGSIPSEIGNLKNLIHLDLSYNYYLSGAIPSSIGYLKNLIHLDLGSNSLSSVIPSSLGSLTNLEYLYLNFNRINGSIPSEIGNLKNLVQLSLSHNALLGTIPSSLGNLINLTYFHLIDNQIQGLIPLSFGNLTNLTHLYLRYNQINGSIPPVIWNLKNLIHLRLDHNNLTGVIPSLGYLIHLNVFNIRRNRIRGHIPSKIGNLNNLTSLDLSDNLIDGKIPSQLQNLKSLESLNLSHNKLSGHIPPLSIYIHKGSSIDFSHNDFEGHIPHELQFVYPPRVFGHNKGLCGEREGLPHCKRGHKTILIISLSTILFLSFVALGILLLSRKTRRNQTKATSTKNGDIFSVWNYDGKIAYEDIIEATEDFDIKYCIGTGGYGSVYKAQLPTGNVVALKKLHGWERDEATYLKSFQNEVQVLSKIQHRNIIKLHGYCLHKRCMFLIYKYMERGSLYCVLSNEVEALELDWIKRVNVIKSIVHALCYMHHDSTPPIIHRDVSSNNILLDFKLDAFLSDFGTARLLHPDSSNQTLLAGTYGYIAPELAYTMAVTEKCDVYSFGVVALETMMGRHPRELFTLLSSSSAQNIMLTDILDSRLPSPQDRQVARDVVLVVWLALKCIHSNPRSRPTMQHISSKLLIQSPFLEPFHGISLWQLNIQEI* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0876 874 Gene3D Phosphorylase Kinase; domain 1 544 662 - -
Vvi10g0876 874 Pfam Protein kinase domain 588 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0876 874 Gene3D Transferase(Phosphotransferase) domain 1 663 855 - -
Vvi10g0876 874 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 297 391 - -
Vvi10g0876 874 SUPERFAMILY RNI-like 112 488 - -
Vvi10g0876 874 ProSitePatterns Protein kinases ATP-binding region signature. 590 612 IPR017441 GO:0005524
Vvi10g0876 874 Gene3D Ribonuclease Inhibitor 394 515 IPR032675 -
Vvi10g0876 874 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 392 515 - -
Vvi10g0876 874 Pfam Leucine rich repeat 399 458 IPR001611 GO:0005515
Vvi10g0876 874 Pfam Leucine rich repeat 328 387 IPR001611 GO:0005515
Vvi10g0876 874 Pfam Leucine rich repeat 231 291 IPR001611 GO:0005515
Vvi10g0876 874 Pfam Leucine rich repeat 109 166 IPR001611 GO:0005515
Vvi10g0876 874 SUPERFAMILY Protein kinase-like (PK-like) 564 853 IPR011009 -
Vvi10g0876 874 PRINTS Leucine-rich repeat signature 445 458 - -
Vvi10g0876 874 PRINTS Leucine-rich repeat signature 257 270 - -
Vvi10g0876 874 SMART LRR_sd22_2 421 447 - -
Vvi10g0876 874 SMART LRR_sd22_2 106 132 - -
Vvi10g0876 874 SMART LRR_sd22_2 278 301 - -
Vvi10g0876 874 SMART LRR_sd22_2 302 328 - -
Vvi10g0876 874 SMART LRR_sd22_2 205 231 - -
Vvi10g0876 874 SMART LRR_sd22_2 254 275 - -
Vvi10g0876 874 SMART LRR_sd22_2 350 376 - -
Vvi10g0876 874 SMART LRR_typ_2 350 373 IPR003591 -
Vvi10g0876 874 SMART LRR_typ_2 445 469 IPR003591 -
Vvi10g0876 874 SMART LRR_typ_2 254 277 IPR003591 -
Vvi10g0876 874 SMART LRR_typ_2 326 349 IPR003591 -
Vvi10g0876 874 SMART LRR_typ_2 421 444 IPR003591 -
Vvi10g0876 874 SMART LRR_typ_2 278 301 IPR003591 -
Vvi10g0876 874 SMART LRR_typ_2 302 325 IPR003591 -
Vvi10g0876 874 SMART LRR_typ_2 205 229 IPR003591 -
Vvi10g0876 874 SMART LRR_typ_2 106 130 IPR003591 -
Vvi10g0876 874 SMART LRR_typ_2 374 397 IPR003591 -
Vvi10g0876 874 FunFam Nuclear pore complex protein NUP107 40 191 - -
Vvi10g0876 874 FunFam MDIS1-interacting receptor like kinase 2 663 856 - -
Vvi10g0876 874 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 271 852 - -
Vvi10g0876 874 ProSiteProfiles Protein kinase domain profile. 584 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0876 874 ProSitePatterns Tyrosine protein kinases specific active-site signature. 708 720 IPR008266 GO:0004672|GO:0006468
Vvi10g0876 874 Gene3D Ribonuclease Inhibitor 294 393 IPR032675 -
Vvi10g0876 874 Gene3D Ribonuclease Inhibitor 35 195 IPR032675 -
Vvi10g0876 874 Gene3D Ribonuclease Inhibitor 196 293 IPR032675 -
Vvi10g0876 874 FunFam Os02g0215700 protein 192 296 - -
Vvi10g0876 874 FunFam Leucine-rich repeat receptor protein kinase MSP1 546 662 - -
Vvi10g0876 874 ProSiteProfiles Leucine-rich repeat profile. 423 446 IPR001611 GO:0005515
Vvi10g0876 874 ProSiteProfiles Leucine-rich repeat profile. 447 469 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0876 Vvi-Chr10 14042781 14046546 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0876 90 756 Receptor kinase-like Gene Family AT4G08850 39.842 8.86e-153 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi10g0876 Pkinase 6.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0876 - - vvi:100247623 1447.95