Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0872 ATGGAGTGGTGTTCCATTACTTGTAGGGCGTTGGTGGTTTCAATGGTATTGTTATTATATAACATGCTCTTGATCTCATCACCACCTGCTGCTGCTGCTACAACTGAGGCACAGGTGGAGGCTGAGGCCGAGGCTCTCCGCAACTCCACTTGGTGGTGGTACATGGAAAACACTACTTCTCATCACTGCACATGGGAAGGCATCACCTGCAACACGGAGGGACATGTCGTTCGAATTACCTATTCATATATCGATGGTAAAATGGTTGAGCTTAGCAAGTTGAAGTTTTCTTCATTTCCCAGCCTCCTCCATCTCAACGTTAGCCATTCTTCCATCTATGGTCGCATCCCAGATGAGATAGGTATGCTTACAAAACTCACTTACCTCCGTATATCTGAATGTGATGTTCATGGTGAGCTACCTGTTTCACTGGGTAACCTTACTCTATTAGAGGAATTGGATTTGGCTTATAACAATCTCTCTGGTGTCATCCCTTCCTCTCTTGGATATTTGAAGAATCTTATTCATTTGGATTTGAGTTTTAACTATGGGCTCTCTGGTGTCATCCCTTCCTCTCTTGGATATTTGAAGAATCTGAAATATTTAGACCTTAGCATCAATGAAATCAATGGTTCTATTCCTTACCAAATTGGGAATTTGAAGAATCTTACTCATTTGTATTTGGTTTCTAACTCTCTTTCTGGTGTCATCCCTTCCTCCCTTGCCAATTTAAGCAATCTAGAATACTTATTCCTTAATTTCAATCGAATTAATGGTTCCATCCCTTCTGAAATCGGGAATTTAAAGAATTTGGTTCAACTATGCTTTAGTCATAACTCTCTCATTGGTACTATTCCTCCCTCTTTGGGTCATCTTACCAATTTGACTTATTTACATCTCTTCAACAATCAAATCCAGGGCGGCATCCCCTTGTCATTTGGTCATCTTACCAAATTGACAGATTTGAATCTTTGTGATAATCAAATCAATGGTTCTATCCCTCCTATAATTTGGAATCTGAAGAATCTAATCCATCTTAGGTTGGATCACAACAATCTTACTGGTGTTATTCCTTCATCTTTGGGTTATCTCATTCATTTAAATGAGTTCAACATTAGTGGAAATCGAATCAATGGTCACATCCCTTCTACGATAGGAAATTTGAATAATCTAACTAGACTCGACCTTAGTGCTAACTTGATCCATGGAAAGATACCTTCCCAAGTCCAAAACTTGAAGCGCTTAACATACTTGAATCTCTCCCACAATAAACTCTCTGGTTCCATTCCTACTCTTTTAATATATGACCACATAAAGCCATCACTTGATTTATCACACAATGATTTAGAGGGTCATATACCCTTTGAATTGCAGTCTAAATTTTCCCAAGGTTCATTTGACAATAACAAAGGTTTATGTGGTGACATCAAAGGCTTGCCTCATTGCAAAGAAGAATACAAAACCACACGCATCATTGTTATTTCTTTGTCTACAACCTTGTTTCTTTTTTTTGTGGTCCTTGGGTTTCTCCTGCTTTCACGGAAGACAAGAAAAATTCAAACCAAGGAAATACCAACAAAAAATGGAGATATATTTTCAGTATGGAACTATGATGGGAAGATTGCTTATGAAGATATCATTAAAGCAACAGAAGACTTTGACATCAAATATTGCATAGGTACAGGAGGCTATGGCAGTGTTTACAAGGCTCAATTGCCTACAGGCAATGTGGTAGCCCTGAAAAAGCTTCATGGATGGGAAAGAGATGAGGCAATATACTTGAAAAGTTTTCAAAATGAGGTGCAAATATTATCAAAGATACGCCATCGAAATATTGTAAAACTTCAAGGCTATTGTCTACACAAAAGATGCATGTTTTTGATTTACAATTACATGGGAAGAGGAAGCTTGTATTGTGTATTGAGTAATGAAGTTGAAGCTTTGGAATTGGATTGGATTAAAAGGGTGAATGTGGTTAAAAGCATAGTCCATGCCGTATGCTACATGCATCATGATTGTACTCCACCCATTATTCATAGGGACATATCAAGCAATAATATTCTTTTGGACTCCAAATTGGATGCTTTTCTATCGGATTTTGGCACCGCTAGACTGCTACATCCTGATTCATCTAATCAAACCCTTCTTGCAGGCACTTATGGTTACATAGCACCAGAGCTTGCCTACACTATGGTCGTGACAGAAAAATGTGATGTTTACAGCTTTGGAGTGGTGGCGCTTGAGACAATGATGGGAAAGCATCCAGGAGAACTTTTCACCTTATTGTCTTCCTCATCAACTCAAAACATAATGCTCACTAATATATTAGATTCACGTCTCCCATCTCCTCAAGATCAACAAGTTGCTAGAGATGTAGTTCTTGTGGTTTGGTTGGCACTCAAATGCATACATTCTAATCCGAGATCTCGTCCAACAATGCAACACATCTTATCAAAGCTTCTTACTCAATCACCATTTCTTGGCCCTTTTAATTGGATTTCACTTTGCCAATTGACTGCTCTAGAAATATAG 2532 0.3855 MEWCSITCRALVVSMVLLLYNMLLISSPPAAAATTEAQVEAEAEALRNSTWWWYMENTTSHHCTWEGITCNTEGHVVRITYSYIDGKMVELSKLKFSSFPSLLHLNVSHSSIYGRIPDEIGMLTKLTYLRISECDVHGELPVSLGNLTLLEELDLAYNNLSGVIPSSLGYLKNLIHLDLSFNYGLSGVIPSSLGYLKNLKYLDLSINEINGSIPYQIGNLKNLTHLYLVSNSLSGVIPSSLANLSNLEYLFLNFNRINGSIPSEIGNLKNLVQLCFSHNSLIGTIPPSLGHLTNLTYLHLFNNQIQGGIPLSFGHLTKLTDLNLCDNQINGSIPPIIWNLKNLIHLRLDHNNLTGVIPSSLGYLIHLNEFNISGNRINGHIPSTIGNLNNLTRLDLSANLIHGKIPSQVQNLKRLTYLNLSHNKLSGSIPTLLIYDHIKPSLDLSHNDLEGHIPFELQSKFSQGSFDNNKGLCGDIKGLPHCKEEYKTTRIIVISLSTTLFLFFVVLGFLLLSRKTRKIQTKEIPTKNGDIFSVWNYDGKIAYEDIIKATEDFDIKYCIGTGGYGSVYKAQLPTGNVVALKKLHGWERDEAIYLKSFQNEVQILSKIRHRNIVKLQGYCLHKRCMFLIYNYMGRGSLYCVLSNEVEALELDWIKRVNVVKSIVHAVCYMHHDCTPPIIHRDISSNNILLDSKLDAFLSDFGTARLLHPDSSNQTLLAGTYGYIAPELAYTMVVTEKCDVYSFGVVALETMMGKHPGELFTLLSSSSTQNIMLTNILDSRLPSPQDQQVARDVVLVVWLALKCIHSNPRSRPTMQHILSKLLTQSPFLGPFNWISLCQLTALEI* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0872 843 ProSiteProfiles Protein kinase domain profile. 553 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0872 843 FunFam MDIS1-interacting receptor like kinase 2 632 825 - -
Vvi10g0872 843 SUPERFAMILY Protein kinase-like (PK-like) 535 820 IPR011009 -
Vvi10g0872 843 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 187 287 - -
Vvi10g0872 843 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 245 822 - -
Vvi10g0872 843 Gene3D Phosphorylase Kinase; domain 1 513 631 - -
Vvi10g0872 843 FunFam Leucine-rich repeat receptor protein kinase MSP1 514 631 - -
Vvi10g0872 843 ProSitePatterns Tyrosine protein kinases specific active-site signature. 677 689 IPR008266 GO:0004672|GO:0006468
Vvi10g0872 843 SMART LRR_typ_2 292 315 IPR003591 -
Vvi10g0872 843 SMART LRR_typ_2 220 243 IPR003591 -
Vvi10g0872 843 SMART LRR_typ_2 244 268 IPR003591 -
Vvi10g0872 843 SMART LRR_typ_2 316 339 IPR003591 -
Vvi10g0872 843 SMART LRR_typ_2 388 411 IPR003591 -
Vvi10g0872 843 SMART LRR_typ_2 340 363 IPR003591 -
Vvi10g0872 843 SMART LRR_typ_2 147 170 IPR003591 -
Vvi10g0872 843 SMART LRR_typ_2 412 436 IPR003591 -
Vvi10g0872 843 SMART LRR_typ_2 196 219 IPR003591 -
Vvi10g0872 843 ProSiteProfiles Leucine-rich repeat profile. 414 436 IPR001611 GO:0005515
Vvi10g0872 843 FunFam Uncharacterized protein 34 185 - -
Vvi10g0872 843 PRINTS Leucine-rich repeat signature 150 163 - -
Vvi10g0872 843 PRINTS Leucine-rich repeat signature 412 425 - -
Vvi10g0872 843 Pfam Leucine rich repeat 366 425 IPR001611 GO:0005515
Vvi10g0872 843 Pfam Leucine rich repeat 150 209 IPR001611 GO:0005515
Vvi10g0872 843 Pfam Leucine rich repeat 222 281 IPR001611 GO:0005515
Vvi10g0872 843 Pfam Leucine rich repeat 293 353 IPR001611 GO:0005515
Vvi10g0872 843 FunFam Putative LRR receptor-like serine/threonine-protein kinase 393 477 - -
Vvi10g0872 843 SUPERFAMILY RNI-like 104 462 - -
Vvi10g0872 843 Gene3D Ribonuclease Inhibitor 186 240 IPR032675 -
Vvi10g0872 843 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 313 391 - -
Vvi10g0872 843 Gene3D Ribonuclease Inhibitor 241 312 IPR032675 -
Vvi10g0872 843 Gene3D Ribonuclease Inhibitor 313 391 IPR032675 -
Vvi10g0872 843 Pfam Protein kinase domain 557 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0872 843 SMART LRR_sd22_2 196 211 - -
Vvi10g0872 843 SMART LRR_sd22_2 388 414 - -
Vvi10g0872 843 SMART LRR_sd22_2 316 342 - -
Vvi10g0872 843 SMART LRR_sd22_2 220 241 - -
Vvi10g0872 843 SMART LRR_sd22_2 244 270 - -
Vvi10g0872 843 SMART LRR_sd22_2 147 173 - -
Vvi10g0872 843 SMART LRR_sd22_2 292 313 - -
Vvi10g0872 843 Gene3D Ribonuclease Inhibitor 392 474 IPR032675 -
Vvi10g0872 843 Gene3D Transferase(Phosphotransferase) domain 1 632 825 - -
Vvi10g0872 843 ProSitePatterns Protein kinases ATP-binding region signature. 559 581 IPR017441 GO:0005524
Vvi10g0872 843 Gene3D Ribonuclease Inhibitor 34 185 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0872 Vvi-Chr10 13872806 13876382 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0872 96 725 Receptor kinase-like Gene Family AT4G08850 38.417 3.46e-144 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi10g0872 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0872 - - vvi:100254590 1649.8