Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0866 ATGGAGTGGTGTTCCATTAATCCTTGTAGGGTGTTGGTGGTTTCAGTGGTATTGTTATCATATAACATGCTCTTGATCTCATCACCTCCTGCTGCTGCTGCTGCTACAACTGACGCACAGGTGGAGGCTGAGGCCGAGGCTCTCCGCAACTCCACTTGGTGGTGGTACATGGAAAACACTACTTCTCATCATTGCACATGGGACGGCATCACCTGCAACAGGGAAGGACGTGTTATTCAGATTACCTATTTAGATTACTATAACCCACGGTATAAGCTTAGCCAGTTGAAGTTTTCTTCATTTCCCAGCCTCCTCCATCTCAACCTTAGCCATTCTTACATCTATGGTCACATCCCAGATGATATAGGTACGCTTACAAAACTCACTTACCTCCGTATCTCTTATTGTGCACTTGATGGTGAGCTACCTGTTTCACTGGGTAACCTCACTCTATTAGAGGAATTGGATTTGAGTCTTAACGTCCATGCTTTATGTTACATGCATCATGACTCTACTCCACCCATTATTCATAGGGATGTATCAAGTAACAATATTCTTTTGGACTTTAAACTGGACGCTTTTCTATCTGATTTTGGCACTGCTAGACTGCTACATCCTGATTCATCCAATCAAACTCTTCTTGCAGGCACTTATGGTTACATAGCACCAGAGCTTGCCTACACTATGGCTGTGACGGAAAAATGTGATGTTTACAGCTTTGGAGTGGTAGCGCTTGAGACAATGATGGGAAAGCATCCGAGAGAAGTTTTCACCTTATTGTCTTCCTCATCAGCTCAAAACATAATGCTCACCGACATATTAGATTCACGTCTACCATCTCCTCAAGATCGACAAGTTGCTAGAGATGTAGTTCTTGTTGTGTGGTTGGCACTTAAATGCATACATTCTAATCCGAGATCTCCTTACAAAACTCACTCACCTTCATATCTTTGGTCAAATAATGGAGGAGAGTACATAGATGGAGGGTTCAATGAGTATTGTGCTGCACAGGGAATTAGGATGGAGAAGACTATTCCTAGGACACCACAACAGAATGGTGTGGCTGAGCACATGAACAGAACTCTCAATGAGCGTGCTAGAAGAAAGAAGGCTTTGCACAACAAGTGGGTATACAGAATAAAGAATGAGCATGATGGTAGCAAACGTTACAAGGCCAGATTAGTTGTTAAAGGGTTCCAGCAGAAGGAGCGCATTGACTATACAGAGATATTTTCTCCAGTTGTGAAGATGTCAACAATCAGACTTGTACTGGGAATGGTAGCTGCAGAAAACTTACATCTTGAGCAGTTAGATGTGAAGACAACATTTCTTCATGGTGACTTGGAGGAAGACCTTTACATGATTCAACCAGAAGGGTTCATTGCTCAAGGACAAGAGAATCTAGTCTACAAACTGAGAAAAAGCTTTTTAACCAACCTGGAATACTTATACCTTAATTTCAATCGAATCAACGGTTCCATCCCTTATGAAATTGGGAATTTAAAGAATCTGATTTATTTTGATTTGGGTTCTAACTCTCTTTCCTTTGTCATTTCTTCATCTCTTGGAAGTTTAACCAACTTGGAATACTTGTACCTTAATTTAAATCGAATCAACGGTTCCATCTCTTTTGAAATTGGGAATTTTAAAATTTTGGTTCAACTGTCCCTGAGTCATAATGCCCTTGTTGGTGTTATTCCTTCATCTTTGGGTTATCTTACCAATTTGACTTATTTCCATCTCATCAACAAACAAATCCAGGGTCCATCCCCTTGTCATTTGGTCTTCTTACCAATTTGA 1800 0.4089 MEWCSINPCRVLVVSVVLLSYNMLLISSPPAAAAATTDAQVEAEAEALRNSTWWWYMENTTSHHCTWDGITCNREGRVIQITYLDYYNPRYKLSQLKFSSFPSLLHLNLSHSYIYGHIPDDIGTLTKLTYLRISYCALDGELPVSLGNLTLLEELDLSLNVHALCYMHHDSTPPIIHRDVSSNNILLDFKLDAFLSDFGTARLLHPDSSNQTLLAGTYGYIAPELAYTMAVTEKCDVYSFGVVALETMMGKHPREVFTLLSSSSAQNIMLTDILDSRLPSPQDRQVARDVVLVVWLALKCIHSNPRSPYKTHSPSYLWSNNGGEYIDGGFNEYCAAQGIRMEKTIPRTPQQNGVAEHMNRTLNERARRKKALHNKWVYRIKNEHDGSKRYKARLVVKGFQQKERIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTTFLHGDLEEDLYMIQPEGFIAQGQENLVYKLRKSFLTNLEYLYLNFNRINGSIPYEIGNLKNLIYFDLGSNSLSFVISSSLGSLTNLEYLYLNLNRINGSISFEIGNFKILVQLSLSHNALVGVIPSSLGYLTNLTYFHLINKQIQGPSPCHLVFLPI* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0866 599 Gene3D Ribonuclease Inhibitor 426 598 IPR032675 -
Vvi10g0866 599 FunFam Uncharacterized protein 36 186 - -
Vvi10g0866 599 SUPERFAMILY Protein kinase-like (PK-like) 162 305 IPR011009 -
Vvi10g0866 599 Gene3D Transferase(Phosphotransferase) domain 1 162 299 - -
Vvi10g0866 599 Gene3D - 300 392 IPR036397 GO:0003676
Vvi10g0866 599 SMART serkin_6 87 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0866 599 SUPERFAMILY Ribonuclease H-like 311 375 IPR012337 -
Vvi10g0866 599 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 365 476 IPR013103 -
Vvi10g0866 599 Pfam Protein kinase domain 161 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0866 599 PANTHER LEUCINE RICH REPEAT KINASE 2 433 595 - -
Vvi10g0866 599 SUPERFAMILY L domain-like 80 597 - -
Vvi10g0866 599 Pfam Leucine rich repeat 478 538 IPR001611 GO:0005515
Vvi10g0866 599 ProSitePatterns Tyrosine protein kinases specific active-site signature. 175 187 IPR008266 GO:0004672|GO:0006468
Vvi10g0866 599 ProSiteProfiles Integrase catalytic domain profile. 249 421 IPR001584 GO:0015074
Vvi10g0866 599 Gene3D Ribonuclease Inhibitor 37 161 IPR032675 -
Vvi10g0866 599 ProSiteProfiles Protein kinase domain profile. 1 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0866 Vvi-Chr10 13742539 13761953 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0866 434 599 Receptor kinase-like Gene Family AT5G65700 26.786 6.89e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi10g0866 Pkinase 5.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0866 - - vvi:100247623 297.36