Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0865 ATGGCTCCAAGAGTACATAAAGGAAAGATTGGTGATGTTAGTAGCCCCAAGGATGGTGATAAATCTGCTGAGGAATCCCTATTGGTTTTACTTCATGCACTTGATAAGCTGCCTGTGAATCTTCAAGCCCTTCAAATGTGTAACATTGGCAAATCTGTTAATCATTTACGTACTCATAAAAACTTAGAAATTCAGAAGAAAGCAAGGAATTTAGCTGATACATGGAAGAAACGAGTTGAGGCATAA 246 0.378 MAPRVHKGKIGDVSSPKDGDKSAEESLLVLLHALDKLPVNLQALQMCNIGKSVNHLRTHKNLEIQKKARNLADTWKKRVEA* 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0865 81 CDD TFIIS_I 6 80 - -
Vvi10g0865 81 MobiDBLite consensus disorder prediction 1 20 - -
Vvi10g0865 81 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 20 80 IPR035441 -
Vvi10g0865 81 ProSiteProfiles TFIIS N-terminal domain profile. 1 81 IPR017923 -
Vvi10g0865 81 SMART TFS2_5 2 81 IPR003617 GO:0005634
Vvi10g0865 81 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 11 81 IPR035441 -
Vvi10g0865 81 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 5 81 - -
Vvi10g0865 81 Pfam TFIIS helical bundle-like domain 30 79 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0865 Vvi-Chr10 13714418 13714663 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vvi10g0865 Med26 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0865 - - cic:CICLE_v10018471mg 138.272