Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0864 ATGGAGTGGTGTTCCATTACTTGTAGGGCGTTGGTGGTTTCAATGGTATTGTTATTATATAACATGCTCTTGATCTCATCACCACCTGCTGCTGCTGCTACAACGGAGGCACAGGTGGAGGCTGAGGCCGAGGCTCTCCGCAACTCCACTTGGTGGTGGTACATGGAAAACACGACTTCTCATCACTGCACATGGGAAGGCATCACCTGCAATACGGAGGGACATGTCGTTCGAATTACCTATTCATATATCGATGGTAAAATGGTTGAGCTTAGCAAGTTGAAGTTTTCTTCATTTCCCAGCCTCCTCCATCTCTACGTTAGCCATTCTTCCATCTATGGTCGCATCCCAGATGAGATAGGTATGCTTACAAAACTCACTTACCTCCGTATATCTGAATGTGATGTTTATGGTGAGCTACCTGTTTCACTGGGTAACCTCACTCTATTAGAGGAATTGGATTTGGCTTATAACAATCTCTCTGGTGTCATCCCTTCCTCTCTTGGATATTTGAAGAATCTTATTCATTTGGATTTGAGTTTTAACTATGGGCTCTCTGGTGTCATCCCTCCCTCTCTTGGATATTTGAAGAATCTGAAATATTTAGACCTTAGCATCAATGAAATCAATGGTTCTATTCCTTCCCAAATTGGGAATTTGAAGAATCTTACTCATTTGTATTTGGTTTCTAACTCTCTTTCTGGTGTCATCCCTTCCCCCCTTGCCAATTTAAGCAATCTGGAATACTTATTCCTTAATTTCAATCGAATTAACGGTTCCATCCCTTCTGAAATCGGAAATTTAAAGAATTTGGTTCAATTGTGCCTTAGTCATAACTCCCTCATCGGTGCTATTCCTTCCTCTTTGGGTCATCTTACCAATTTGACTTATTTACATCTCTTCAACAATCAAATCCAGGGTGGCATCCCCTTGTCATTTGGTCATCTTACCAATTTGACAGATCTGTATCTTTGTTATAATCAAATCAATGGTTCTATCCCTCCTATAATTTGGAATCTGAAGAATCTAATCCATCTTAGATTGGATCACAACAATCTTACCGGTGTTATTCCTTCATCTTTGGGTTATCTCATTCATTTACATGAGTTCAACATTAGTGGAAATCAAATCAGTGGTCAGATCCCTTCTTCGATAGGAAATTTGAATAATCTAACTAGACTCGACCTTAGTGACAACTTGATCCATGGAAAGATACCTTCCCAAGTCCAAAACTTGAAGCGCTTAGTATACTTGAATCTCTCCCACAATAAACTCTCTGGTTCCATTCCTACTCTTCTAATATATGACCACATAAGGCCATCACTTGATTTATCATACAATGATTTAGAGGGTCATATACCCTTTGAATTGCAGTCTAAATTTTCCCAAGGTTCATTTGACAATAACAAAGGTTTATGTGTATGGAACTATGATGGGAAGATTGCCTATGAAGATATCATTAAAGCAACAGAAGACTTTGACATCAAATATTGCATAGGTACAGGAGGCTATGGCAGTGTTTACAAGGCTCAATTGCCTACAGGCAATGTGGTAGCCCTGAAAAAGCTTCATGGATGGGAAACAGATGAGGCAACATACTTGAAAAGTTTTCAAAATGAGGTGCAAATATTATCAAAGATACGCCATCGAAATATTGTAAAACTTCAAGGCTATTGTCTACACAAAAGATGCATGTTTTTGATTTACAATTACATGGGAAGAGGAAGCTTGTATTGTGTATTGAGTAATGAAGTTGAAGCTTTGGAATTGGATTGGATTAAAAGGGTGAATGTGGTTAAAAGCATAGTCCATGCCGTATGCTACATGCATCATGATTGTACTCCACCCATTATTCATAGGGACATATCAAGCAATAATATTCTTTTGGACTCCAAATTGGATGCTTTTCTATCGGATTTTGGCACCTCTAGACTGCTACATCCTGATTCATCTAATCAAACCCTTCTTTCAGGCACTTATGGTTACATAGCACCAGAGCTTGCCTACACTATGGTCGTGACAGAAAAATGTGATGTTTACAGCTTTGGAGTGGTGGCGCTTGAGACAATGATGGGAAAGCATCCAGGAGAACTTTTCACCTTATTGTCTTCCTCATCAACTCAAAACATAATGCTCACTGATATGTTAGATTCACGTCTCCCATCTCCTCAAGATCAACAAGTTGCTAGAGATGTAGTTCTTGTGGTTTGGTTGGCACTCAAATGCATACATTCTAATCCGAGATCTCGTCCAACAATGCAACACATCTCATCAAAGCTTCTTACTCAATCACCATTTCTTGGCCCTTTTCATGGGATTTCACTTTGGCAATTGAATGCTCTAGAAATATAA 2352 0.3924 MEWCSITCRALVVSMVLLLYNMLLISSPPAAAATTEAQVEAEAEALRNSTWWWYMENTTSHHCTWEGITCNTEGHVVRITYSYIDGKMVELSKLKFSSFPSLLHLYVSHSSIYGRIPDEIGMLTKLTYLRISECDVYGELPVSLGNLTLLEELDLAYNNLSGVIPSSLGYLKNLIHLDLSFNYGLSGVIPPSLGYLKNLKYLDLSINEINGSIPSQIGNLKNLTHLYLVSNSLSGVIPSPLANLSNLEYLFLNFNRINGSIPSEIGNLKNLVQLCLSHNSLIGAIPSSLGHLTNLTYLHLFNNQIQGGIPLSFGHLTNLTDLYLCYNQINGSIPPIIWNLKNLIHLRLDHNNLTGVIPSSLGYLIHLHEFNISGNQISGQIPSSIGNLNNLTRLDLSDNLIHGKIPSQVQNLKRLVYLNLSHNKLSGSIPTLLIYDHIRPSLDLSYNDLEGHIPFELQSKFSQGSFDNNKGLCVWNYDGKIAYEDIIKATEDFDIKYCIGTGGYGSVYKAQLPTGNVVALKKLHGWETDEATYLKSFQNEVQILSKIRHRNIVKLQGYCLHKRCMFLIYNYMGRGSLYCVLSNEVEALELDWIKRVNVVKSIVHAVCYMHHDCTPPIIHRDISSNNILLDSKLDAFLSDFGTSRLLHPDSSNQTLLSGTYGYIAPELAYTMVVTEKCDVYSFGVVALETMMGKHPGELFTLLSSSSTQNIMLTDMLDSRLPSPQDQQVARDVVLVVWLALKCIHSNPRSRPTMQHISSKLLTQSPFLGPFHGISLWQLNALEI* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0864 783 FunFam Leucine-rich repeat receptor protein kinase MSP1 457 571 - -
Vvi10g0864 783 Gene3D Transferase(Phosphotransferase) domain 1 572 765 - -
Vvi10g0864 783 FunFam Uncharacterized protein 34 185 - -
Vvi10g0864 783 ProSiteProfiles Protein kinase domain profile. 493 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0864 783 ProSitePatterns Tyrosine protein kinases specific active-site signature. 617 629 IPR008266 GO:0004672|GO:0006468
Vvi10g0864 783 ProSitePatterns Protein kinases ATP-binding region signature. 499 521 IPR017441 GO:0005524
Vvi10g0864 783 Gene3D Ribonuclease Inhibitor 380 473 IPR032675 -
Vvi10g0864 783 FunFam MDIS1-interacting receptor like kinase 2 572 766 - -
Vvi10g0864 783 Gene3D Ribonuclease Inhibitor 183 284 IPR032675 -
Vvi10g0864 783 Gene3D Ribonuclease Inhibitor 285 379 IPR032675 -
Vvi10g0864 783 SUPERFAMILY Protein kinase-like (PK-like) 477 760 IPR011009 -
Vvi10g0864 783 Pfam Protein kinase domain 497 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0864 783 SUPERFAMILY L domain-like 59 235 - -
Vvi10g0864 783 SMART LRR_sd22_2 196 222 - -
Vvi10g0864 783 SMART LRR_sd22_2 316 342 - -
Vvi10g0864 783 SMART LRR_sd22_2 244 270 - -
Vvi10g0864 783 SMART LRR_sd22_2 147 173 - -
Vvi10g0864 783 SMART LRR_sd22_2 388 414 - -
Vvi10g0864 783 SMART LRR_sd22_2 292 313 - -
Vvi10g0864 783 ProSiteProfiles Leucine-rich repeat profile. 414 436 IPR001611 GO:0005515
Vvi10g0864 783 FunFam Leucine-rich repeat receptor protein kinase EMS1 189 282 - -
Vvi10g0864 783 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 244 762 - -
Vvi10g0864 783 Pfam Leucine rich repeat 222 281 IPR001611 GO:0005515
Vvi10g0864 783 Pfam Leucine rich repeat 293 353 IPR001611 GO:0005515
Vvi10g0864 783 Pfam Leucine rich repeat 366 425 IPR001611 GO:0005515
Vvi10g0864 783 PRINTS Leucine-rich repeat signature 150 163 - -
Vvi10g0864 783 PRINTS Leucine-rich repeat signature 412 425 - -
Vvi10g0864 783 Gene3D Phosphorylase Kinase; domain 1 474 571 - -
Vvi10g0864 783 Gene3D Ribonuclease Inhibitor 35 182 IPR032675 -
Vvi10g0864 783 FunFam Os02g0215700 protein 283 383 - -
Vvi10g0864 783 SMART LRR_typ_2 292 315 IPR003591 -
Vvi10g0864 783 SMART LRR_typ_2 196 220 IPR003591 -
Vvi10g0864 783 SMART LRR_typ_2 244 268 IPR003591 -
Vvi10g0864 783 SMART LRR_typ_2 316 339 IPR003591 -
Vvi10g0864 783 SMART LRR_typ_2 340 363 IPR003591 -
Vvi10g0864 783 SMART LRR_typ_2 412 436 IPR003591 -
Vvi10g0864 783 SMART LRR_typ_2 147 170 IPR003591 -
Vvi10g0864 783 SMART LRR_typ_2 388 411 IPR003591 -
Vvi10g0864 783 SUPERFAMILY L domain-like 183 475 - -
Vvi10g0864 783 FunFam Putative LRR receptor-like serine/threonine-protein kinase 393 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0864 Vvi-Chr10 13676298 13679879 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0864 101 665 Receptor kinase-like Gene Family AT4G08850 37.947 4.74e-120 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi10g0864 Pkinase 9.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0864 - - vvi:100247623 896.73