Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0863 ATGGCTAGCTTAGACCTTAGCGATAATTTGATCAATGTAAAGATACCTTCCCAGCTCCAAAACTTGGAGAGCTTAGAAAACTTGAATCTTTCCCACAATAAACTCTCAGGTCACATTCCTACTCTTCCAAAATATGGGTGGTTATCAATTGATTTGTCATACAATGATTTGGAGGGTCATATACCCATTGAATTACAACTTGAACATTCACCGGAGGTGTTTAGCTACAACAAAGGTTTATGTGGTGAAATAAAAGGTTGGCCACATTGCAAAAGAGGACATAAAACTATGCTCATCACTACTATTGCTATATCTACCATCTTGTTTCTTCTTTTTGCGGTGTTTGGGTTTCTCTTGCTTTCGCGGAAGATGAGACAAAATCAAACCAAGACACCATTGAAAAAAAATGAAAAAAATGGAGATATATTTTCAATATGGAACTATGATGGAAAGATTGCTTACGAAGACATCATTGAAGCAACAGAAGACTTTGATATCAAATACTGCATAGGTACTGGAGGCTATGGCACTGTTTACAAGGCTCAATTGCCTACAGGCAATGTGGTAGCCTTGAAAAAGCTTCATGGATGGGAAAGAGATGAGGCAACATACTTTAAAAGTTTTCAAAATGAGGTGCAGGTTTTGTCAAAAATACAACATCGGAATATCATAAAACTTCATGGCTATTGTTTGCACAAAAGATGCATGTTTTTGATTTACAAGTACATGGAAAGAGGAAGCTTATTCGGTGTATTGAGCAATGAAGTCGAAGCTTTGGAATTGGATTGGATTAAAAGGGTGAATGTGGTCAAAAGCATAGTCCATGCCTTATGCTATATGCATCATGACTATACTCTGCCCATTATTCATAGGGACATATCAAGCAGCAATATTCTTTTGGACTCTAAATTGGACGCTTTTCTATCGGATTTTGGTACTGCTAGACTGCTGCATCATGATTCATCCAATCAAACTGTTCTTGCAGGCACTTATGGTTACATAGCGCCAGAGCTTGCCTACACTATGGTTGTGACGGAAAAATGTGATGTTTATAGCTTTGGAGTGGTGGCGCTTGAGACAATGATGGGAAAGCATCCAAGAGAACTTTTCACCTTATTGTCTTCCTCATCAGCTCAAAGCATAATGCTCACTGATATATTAGATTCACGTCTCCCATCTCCTCAAGATCAACAAGTTGCTAGAGATGTAGTTCTTGTGGTCTGGTTGGCACTCAAATGCATACATTCTAATCCGAGATCTCGTCCAACAATGCAACTCATCTCATCGAGGCTTCTTACTCAATTACCATTTCTTGAAACTTTTCATGGGATTTCACTTTGGCTATTGAATACTCAAGAAATATAA 1365 0.3817 MASLDLSDNLINVKIPSQLQNLESLENLNLSHNKLSGHIPTLPKYGWLSIDLSYNDLEGHIPIELQLEHSPEVFSYNKGLCGEIKGWPHCKRGHKTMLITTIAISTILFLLFAVFGFLLLSRKMRQNQTKTPLKKNEKNGDIFSIWNYDGKIAYEDIIEATEDFDIKYCIGTGGYGTVYKAQLPTGNVVALKKLHGWERDEATYFKSFQNEVQVLSKIQHRNIIKLHGYCLHKRCMFLIYKYMERGSLFGVLSNEVEALELDWIKRVNVVKSIVHALCYMHHDYTLPIIHRDISSSNILLDSKLDAFLSDFGTARLLHHDSSNQTVLAGTYGYIAPELAYTMVVTEKCDVYSFGVVALETMMGKHPRELFTLLSSSSAQSIMLTDILDSRLPSPQDQQVARDVVLVVWLALKCIHSNPRSRPTMQLISSRLLTQLPFLETFHGISLWLLNTQEI* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0863 454 PANTHER LEUCINE RICH REPEAT KINASE 2 3 434 - -
Vvi10g0863 454 ProSitePatterns Tyrosine protein kinases specific active-site signature. 288 300 IPR008266 GO:0004672|GO:0006468
Vvi10g0863 454 Gene3D Phosphorylase Kinase; domain 1 123 242 - -
Vvi10g0863 454 SUPERFAMILY Protein kinase-like (PK-like) 143 431 IPR011009 -
Vvi10g0863 454 Gene3D Transferase(Phosphotransferase) domain 1 243 436 - -
Vvi10g0863 454 SUPERFAMILY L domain-like 3 65 - -
Vvi10g0863 454 Gene3D Ribonuclease Inhibitor 1 97 IPR032675 -
Vvi10g0863 454 ProSiteProfiles Leucine-rich repeat profile. 24 46 IPR001611 GO:0005515
Vvi10g0863 454 FunFam Leucine-rich repeat receptor protein kinase MSP1 125 242 - -
Vvi10g0863 454 FunFam MDIS1-interacting receptor like kinase 2 243 436 - -
Vvi10g0863 454 ProSiteProfiles Protein kinase domain profile. 164 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0863 454 PRINTS Leucine-rich repeat signature 1 12 - -
Vvi10g0863 454 PRINTS Leucine-rich repeat signature 22 35 - -
Vvi10g0863 454 ProSitePatterns Protein kinases ATP-binding region signature. 170 192 IPR017441 GO:0005524
Vvi10g0863 454 Pfam Protein kinase domain 168 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0863 Vvi-Chr10 13578039 13580381 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0863 4 336 Receptor kinase-like Gene Family AT4G08850 44.759 1.44e-88 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi10g0863 Pkinase 5.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0863 - - vvi:100264787 894.034