Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0862 ATGGAGAACAACAACATCACCACCACCAACTCTAAACTTGACTCCGATGAACCCAAATCCGTCGCCACCGCCACGGCCGCTGAGGAGCAGAACCCTAATTCCCCGGCCGCCGAAGACCCAAACCCTAATTCGAACCAGGCGCCGCCTCGCCAGTCTTCGAGGACTCCGTTCACCAATCTTAGCCAGGTCGATGCCGACCTCGCCCTCGCCCGCACCTTGCAGGAGCAGGAAAGAGCATATATGATGCTAAGGATCAATGGTGAAGGGAGTGATTACGGAAGTTGGGAAGCTGGAAGCTATTTCAATGAGGAAGAGTTTGATGATCCCAATGATGGCACTGATGTGGATGATGGGGTTGATGATGAGGATGAGGATGAAGGGGAGTATGATGGCACTGATGAAGATGCTTTTGATGTGCATGCTCAAGCTGATGATGGGGAGGACGACAACCCAACTATTGAATTTGATCCAGCTGTGTTTTCTAGCGATGAGGCCTATGCAAGAGCTCTACAGCACATTGAAGAACAAGAAATGGCTGCAAGGTTGTTGGCCCTTGCTGGGATACATGATCGTGAGTGCCTGTTCAGAAATGGAGTTGAGGATACAGAGGATCATGGCGGTAACTCTCAGGATACATGGGAGGAGGTTGACCCAGATGAACTTTCATATGAGGAATTGCTTGCATTGGGTGAAGTAATCGGAACTGAGAGCCGAGGGCTTTCATCTGATACAATTGCCTCTTTGCCTTCAGTTACCTACAAGGCACAAAGCAATCAGGAAGGAAGCAATGATTCATGTGTCATTTGCCGGTTGGACTATGAGGATGGTGAGACCTTGACTGTGCTTTCTTGCAAACATTCATACCATTCTGAGTGCATAAACAATTGGTTGCAAATAAACAAGCACTGA 909 0.4873 MENNNITTTNSKLDSDEPKSVATATAAEEQNPNSPAAEDPNPNSNQAPPRQSSRTPFTNLSQVDADLALARTLQEQERAYMMLRINGEGSDYGSWEAGSYFNEEEFDDPNDGTDVDDGVDDEDEDEGEYDGTDEDAFDVHAQADDGEDDNPTIEFDPAVFSSDEAYARALQHIEEQEMAARLLALAGIHDRECLFRNGVEDTEDHGGNSQDTWEEVDPDELSYEELLALGEVIGTESRGLSSDTIASLPSVTYKAQSNQEGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLQINKH* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0862 302 Pfam Ring finger domain 264 301 IPR001841 -
Vvi10g0862 302 ProSiteProfiles Zinc finger RING-type profile. 266 296 IPR001841 -
Vvi10g0862 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 302 IPR013083 -
Vvi10g0862 302 MobiDBLite consensus disorder prediction 1 61 - -
Vvi10g0862 302 MobiDBLite consensus disorder prediction 102 134 - -
Vvi10g0862 302 MobiDBLite consensus disorder prediction 102 133 - -
Vvi10g0862 302 FunFam E3 ubiquitin ligase BIG BROTHER-related 232 302 - -
Vvi10g0862 302 SUPERFAMILY RING/U-box 256 302 - -
Vvi10g0862 302 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 15 301 IPR043312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0862 Vvi-Chr10 13534449 13543935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0862 20 210 C3H Transcription Factor Family AT3G19910 51.562 2.64e-37 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0862 K19045 - vvi:100247631 568.926