Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0855 ATGGTTGATATTGTTATTTCCGTTGCAGTAGAAGTTGCAAAGTGCCTGGTTGATCCAATTAAACGTCAACTGGGTTATCTCCTTAACTACCGTCGCAACATTACGGATCTCAACCAACAAATTGAAAATCTCCGTCGTGAAAGGGACGAACTGCAGATACCTGTGAATGAGGCTTATAGGCAAGGGGATGAAATCTTTCCTCGTGTTCAGGAGTGGCTGACGTATGCCGAAGGGATCATCCTAGAGAGCAATGATTTCAATGAACATGAAAGGAAAGCAAGCAAGAGCTGTTTCTATTTAAAGTCCCGCTACCAACTAAGCAAGCAAGCAGAGAAGCAGGCTGCGAAGATTGTTGATAAAATCCAAGAAGCTCGTAACTTTGGTGGCAGAGTATCGCATCGCCCTCCTCCATTCAGCAGCTCTGCATCTTTCAAAGATTATGAGGCTTTCCAGTCAAGAGAGTCTACTTTTAACCAAATTATGGAGGCCTTGAGAAACGAAGATATGCGCATGCTCGGTGTCTGGGGAATGGGCGGCGTGGGCAAAACCACTCTTGTCAAACAAGTAGCTCAACAAGCGGAGGAAGACAAGCTCTTTCACAAGGTGGTCATGGTGTTACACATATCCCAAACTCCCAACATCACAGAAATTCAAGAAAAAATTGCAAGAATGTTGGGTTTGAAATTTGAGGCGGGGGAGGATAGAGCAGGTCGCCTGAAGCAAAGGTTGAAGGGAGAGGAGAAAATCCTGGTGATCTTAGATGATATCTGGGGGAAACTTGACTTGGGAGAAATAGGAATTCCTTATGGAGATGATCACAAGGGGTGCAAAGTGCTGCTGACTTCCCGGGAGCGTCAGGTTTTATCTAAAGATATGCGTACTCAAAAGGAGTTCCATCTTCAACATTTAAGTGAAGATGAAGCCTGGAATTTATTCAAGAAGACAGCAGGTGATTCCGTGGAGAAGCCTGAACTGCGTCCCATAGCAGTTGATGTAGCTAAAAAATGTGACGGTCTACCAGTTGCAATTGTCACCATTGCAAATACATTAAGAGGTGAGAGTGTGCATGTATGGAAGAATGCCTTGGAAGGACTGAGAACGGCTGCACCAACAAGCATCAGAGGAGTGACTGAAGGCGTCTACTCATGTCTGGAGCTGAGCTACAACCATTTGAAAGGTGATGAAGTAAAGTCATTGTTTTTACTTTGCGCTTTGCTGGGGGATGGTGATATTTCCATGGATCGCTTGCTACAATTTGCCATGTGTTTGAATTTGTTTGAAGGAATATATTTATGGGAGAAAGCAATAAATAGACTAATTACATTGGTGGAAAACCTCAAAGCCTCAAGCTTGTTGCTTGACCATGAAGGAGATGGTGATGAATATCCGAGCTTGCTTTTTGATCACGCTTTTGTCAGAATGCATGATGTTGTTCGTGACGTTGCCAGATCAATTGCATCCAAAGATCCTCATCGATTTGTGGTGAGAGAAGCTGTTGGATCAGAAGAAGCTGTTGAATTACGAGAATGGCAGAGGACGGATGAGTGCAGAAATTGCACTCGCATCTCTTTGATATGCAGAAATATGGATGAGCTTCCAAAAGGCTTGGTATGTCCGAAACTTGAATTCTTTTTATTGAATTCAAGTAATGATGATGCTTATTTGAAAATTCCAGATGCCTTTTTCCAAGACACCAAACAACTCAGAATTTTAGATTTGTCTAAAGTGTCTCTTACACCATCTCCTTCATCACTTGGTTTTCTTTCAAATCTTCAAACATTGCGTCTAAATCAATGCCAGATCCAAGACATAACAGTAATTGGAGAACTGAGGAAACTACAAGTCCTTAGTTTGGCAGAGTCCAACATTGAACAGCTGCCAAATGAAGTGGCGCAATTGAGTGATCTAAGGATGTTGGATTTGCAGTATTGTGAAAGCCTTGAAGAGGGTTTCGTTGAACTCAAGTATCTCACTCTCGAGGAATGTCCTACCGTTCAATACATCCTTCATTCCAGTACTTCAGTGGAATGGGTTCCACCACCTAATACCTTCTGTATGTTGGAGGAACTGATTCTTGATGGCCTAGATAACTTGGAGGCAGTATGCCATGGCCCAATTCCGATGGGGTCTTTTGGTAATTTAAGAATTCTAAGACTAAGGTCTTGTAAGAGGTTGAAATATGTTTTCTCTCTTCCAGCACAACATGGAAGGGAATCAGCTTTTCCTCAACTGCAACATTTGGAGTTGAGTGATCTCCCAGAGCTCATTAGCTTCTACTCCACAAGAAGCAGTGGTACCCAGGAGTCAATGACAGTTTTCAGTCAACAGGTTGCACTCCAAGGCTTGGAGTCCTTGTCTGTACGCGGACTAGATAATATAAGAGCATTGTGGTCTGACCAACTTCCAGCAAATTCATTTTCCAAATTAAGGAAATTGCAAGTAAGGGGATGCAACAAATTGCTAAACCTTTTTCTGGTTTCTGTGGCGAGTGCCCTTGTGCAACTTGAGGACCTATATATATCGAAGAGTGGAGTGGAGGCAATTGTTGCCAATGAAAATGAAGATGAAGCAGCACCTTTACTCTTATTCCCTAACCTTACCTCTCTCACACTCTCCGGTTTACACCAACTCAAAAGATTTTGCTCAAAAAGGTTTAGTTCAAGCTGGCCACTTCTGAAAGAATTGAAAGTGCTCGATTGTGATAAAGTGGAGATACTCTTTCAAGAAATAAATTCTGAATGTGAACTTGAGCCACTCTTCTGGGTAGAACAGCAAGAGCCAAAGAAAACGCCATACCCAGTAGTTGATCTTCGATCATCGGGATTACCAGCCCAATCTGAATCACAAAAGGCTTGA 2856 0.4265 MVDIVISVAVEVAKCLVDPIKRQLGYLLNYRRNITDLNQQIENLRRERDELQIPVNEAYRQGDEIFPRVQEWLTYAEGIILESNDFNEHERKASKSCFYLKSRYQLSKQAEKQAAKIVDKIQEARNFGGRVSHRPPPFSSSASFKDYEAFQSRESTFNQIMEALRNEDMRMLGVWGMGGVGKTTLVKQVAQQAEEDKLFHKVVMVLHISQTPNITEIQEKIARMLGLKFEAGEDRAGRLKQRLKGEEKILVILDDIWGKLDLGEIGIPYGDDHKGCKVLLTSRERQVLSKDMRTQKEFHLQHLSEDEAWNLFKKTAGDSVEKPELRPIAVDVAKKCDGLPVAIVTIANTLRGESVHVWKNALEGLRTAAPTSIRGVTEGVYSCLELSYNHLKGDEVKSLFLLCALLGDGDISMDRLLQFAMCLNLFEGIYLWEKAINRLITLVENLKASSLLLDHEGDGDEYPSLLFDHAFVRMHDVVRDVARSIASKDPHRFVVREAVGSEEAVELREWQRTDECRNCTRISLICRNMDELPKGLVCPKLEFFLLNSSNDDAYLKIPDAFFQDTKQLRILDLSKVSLTPSPSSLGFLSNLQTLRLNQCQIQDITVIGELRKLQVLSLAESNIEQLPNEVAQLSDLRMLDLQYCESLEEGFVELKYLTLEECPTVQYILHSSTSVEWVPPPNTFCMLEELILDGLDNLEAVCHGPIPMGSFGNLRILRLRSCKRLKYVFSLPAQHGRESAFPQLQHLELSDLPELISFYSTRSSGTQESMTVFSQQVALQGLESLSVRGLDNIRALWSDQLPANSFSKLRKLQVRGCNKLLNLFLVSVASALVQLEDLYISKSGVEAIVANENEDEAAPLLLFPNLTSLTLSGLHQLKRFCSKRFSSSWPLLKELKVLDCDKVEILFQEINSECELEPLFWVEQQEPKKTPYPVVDLRSSGLPAQSESQKA* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0855 951 SUPERFAMILY L domain-like 473 903 - -
Vvi10g0855 951 PRINTS Disease resistance protein signature 631 647 - -
Vvi10g0855 951 PRINTS Disease resistance protein signature 171 186 - -
Vvi10g0855 951 PRINTS Disease resistance protein signature 243 257 - -
Vvi10g0855 951 PRINTS Disease resistance protein signature 336 350 - -
Vvi10g0855 951 Gene3D - 302 391 IPR042197 -
Vvi10g0855 951 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 772 911 - -
Vvi10g0855 951 Gene3D Ribonuclease Inhibitor 507 676 IPR032675 -
Vvi10g0855 951 Coils Coil 27 61 - -
Vvi10g0855 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 403 IPR027417 -
Vvi10g0855 951 Gene3D - 138 301 IPR027417 -
Vvi10g0855 951 Gene3D Ribonuclease Inhibitor 732 921 IPR032675 -
Vvi10g0855 951 SMART AAA_5 168 304 IPR003593 GO:0016887
Vvi10g0855 951 MobiDBLite consensus disorder prediction 932 951 - -
Vvi10g0855 951 FunFam Probable disease resistance protein At1g61300 137 297 - -
Vvi10g0855 951 ProSiteProfiles Leucine-rich repeat profile. 590 611 IPR001611 GO:0005515
Vvi10g0855 951 Pfam NB-ARC domain 154 389 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0855 Vvi-Chr10 13357268 13369931 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0855 168 489 WRKY Transcription Factor Family AT5G45050 25.672 2.41e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0855 - - vvi:104880588 1286.55