Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0838 ATGGTTGATATTGTTATTTCCGTTGCAGCAAAAGTCGCAGAGTGCCTGGTTGATCCAATTGCACGTCAACTGGGTTATCTCTTTAACTACCGTCGCAACTATGTGGATCTGACTGAGCAAATTGAGATGCTCGATCATGCCAGAGTGAGGCTGCAGCAATCGGTGGAAGAGGCTAATAGGCAAGGGGATGAAATCTTTCCTGATGTTCAGGAGTGGCTTAAGGGTGATGAAAGGATCATCCAAAAGAAAGAGGACTTCATTGAAGATGAAAAGAAAGCAAGCAAGAGCTGTTTCTATTTAAAGTCCCGCTACCAGCTAAGCAAGCAAGCAAAGAAGCAGGCTGGGGACATTGTTCTTAAAATCCAACAAGCTCATAACTTTGGTGACAGAGTATCGTATCGCCCTTCTCCTCCTCCTCTTCCATTCATCAGCTCTGCATCTTTCAAAGATTATGAAGCTTTCCAGTCAAGAGAGTCTACTTTTAACCAAATTATGCAGGCCTTGAGAAACGAAAATATGCGCATGATCGGTGTCTGGGGAATGGGCGGCGTGGGCAAAACCACTCTTGTCAAACAAGTAGCCCAACAAGCGGAGGAAAACAAGCTCTTTCACAAGGTGGTCATGGCCTTAAACATATCCCAAACTCCCAACATCGCAGAAATTCAAGGAAAAATTGCAAGAATGTTGGGTTTGAAATTTGAGGCGGAGGAGGATAGAGCAGGTCGCCTGAGGCAAAGGTTGAAGAGAGAGGAGAAAATCCTGGTGATCTTAGATGATATCTGGGGGAAACTTGACTTGCGAGATATAGGAATTCCTGATGGAGATGATCACAAGGGGTGCAAAGTGCTGCTGACTTCCCGGGAGCAGGAGGTTTTATCTGAAGATATGCGTACTCAAAAGAAGTTCCATCTTCAACATTTAAGTGAAGATGAAGCCTGGAATTTATTCAAGAAGACAGCAGGTGATTCCGTGGAGAAGCCTGAACTGCGTCCCATTGCAGTTGATGTAGCTAAAAAATGTGACGGTCTACCAGTTGCAATTTTCACCATTGCAACTGCATTAAGAGGTAAGAGTAGGGTGAATGTATGGGAGAATGCCTTGGAAGAACTGAGAGGGGCTGCACCAACAAGCATCAGAGGAGTGACTGAAGGCGTCTACTCATGTCTGGAGCTGAGCTACAACCATTTGAAAGGTGATGAAGTAAAGTCATTGTTTTTACTTTGCGCTTTGCTGGGGGATGGTGATATTTCCATGGATCGCTTGCTACAATTTGCCACGTGTTTGAATTTGTTTGAAGGAATATATTTATGGGAGAAAGCAATAAATAGACTAATTACATTGGTGGAAAACCTCAAAGCCTCAAGCTTGTTGCTTGACCATGAAGGAGATGGTGATAGCTCTTCGAGCTTGCTTTTTGATCACGCTTTTGTCAGAATGCATGATGTTGTTCGAGATGCTGCCAGATCAATTGCATCCAAAGATCCTCATCGATTTGTGGTGAGAGAAGCTGTTGGATCACAAGAAGCTGTTGAATTACGAGAATGGCAGAGGACGGATGAGTGCAGAAATTGCACTCGCATCTCTTTGATATGCAGAAATATGGATGAGCTTCCACAAGGCTTGGTATGTCCGAAACTTGAATTCTTTTTATTGAATTCAAGTAATGATGATGCTTATTTGAAAATTCCAGATGCCTTTTTCCAAGACACCAAACAACTCAGAATTTTAGATTTGTCTAAAGTGTCTCTTACACCATCTCCTTCATCACTTGGTTTTCTTTCAAATCTTCAAACATTGCGTCTAAATCAATGCCAGATCCAAGACATAACAGTAATCGGAGAACTGAAGAAACTACAAGTCCTTAGTTTGGCAGAGTCCTACATTGAACAGCTGCCAAATGAAGTGGCGCAATTGAGTGATCTAAGGATGTTGGATTTGCAGAATTGCTGTTGGCTCAAAGTAATTCCACGAAATGTTATATCAAGTCTATCCCAATTAGAGTATTTGAGTATGAAAGGAAGTTTAAGAATTGAATGGGAGGCGGAAGGATTTAATAGGGGAGAAAGAATTAATGCTTGCCTTTCTGAGCTGAAACACCTGTCTGGTTTGAGGACTTTGGAGGTACAAGTATCAAATCCCAGTTTGTTTCCAGAAGATGATGTGCTCTTCGAAAACCTCAACTTGATCAGATATTCAATACTAATAGGCTATGACTGGCAGATACTAAATGATGAGTATAAAGCCTCAAGAAGGTTGAGTTTGCGAGGGGTTACAAGTCTTTATATGGTGAAGTGCTTCTCCAAGCTGTTGAAGAGAAGTCAAGAACTATACTTGTGCAAATTGAATGATACGAAGCATGTGGTTTATGAGTTAGACAAGGAGGGTTTCGTTGAACTCAAGTATCTCACTCTCGAGGAATGTCCTACCGTTCAATACATCCTTCATTCCAGTACTTCAGTGGAATGGGTTCCACCACCTAATACCTTCTGTATGTTGGAGGAACTGATTCTTACTTGGCTAGATAACTTGGAGGCAGTATGCCATGGCCCAATTCCGATGGGGTCTTTTGGTAATTTAAGAATTCTAAGACTAGAGTATTGTGAGAGGTTGAAATATGTCTTCTCTCTTCCCGCACAATATGGAAGGGAATCAGCTTTTCCTCAACTGCAAAATTTGTACTTGTGTGGTCTCCCAGAGCTCATTAGCTTCTACTCCACAAGAAGCAGTGGTACCCAGGAGTCAATGACATTTTTCAGTCAACAGATTTTGCTTCGGAAGGTTTACTTTAAGATGGCCACTTTTAAAAGAATTGGAAGTGTGGGGTTGTGA 2829 0.421 MVDIVISVAAKVAECLVDPIARQLGYLFNYRRNYVDLTEQIEMLDHARVRLQQSVEEANRQGDEIFPDVQEWLKGDERIIQKKEDFIEDEKKASKSCFYLKSRYQLSKQAKKQAGDIVLKIQQAHNFGDRVSYRPSPPPLPFISSASFKDYEAFQSRESTFNQIMQALRNENMRMIGVWGMGGVGKTTLVKQVAQQAEENKLFHKVVMALNISQTPNIAEIQGKIARMLGLKFEAEEDRAGRLRQRLKREEKILVILDDIWGKLDLRDIGIPDGDDHKGCKVLLTSREQEVLSEDMRTQKKFHLQHLSEDEAWNLFKKTAGDSVEKPELRPIAVDVAKKCDGLPVAIFTIATALRGKSRVNVWENALEELRGAAPTSIRGVTEGVYSCLELSYNHLKGDEVKSLFLLCALLGDGDISMDRLLQFATCLNLFEGIYLWEKAINRLITLVENLKASSLLLDHEGDGDSSSSLLFDHAFVRMHDVVRDAARSIASKDPHRFVVREAVGSQEAVELREWQRTDECRNCTRISLICRNMDELPQGLVCPKLEFFLLNSSNDDAYLKIPDAFFQDTKQLRILDLSKVSLTPSPSSLGFLSNLQTLRLNQCQIQDITVIGELKKLQVLSLAESYIEQLPNEVAQLSDLRMLDLQNCCWLKVIPRNVISSLSQLEYLSMKGSLRIEWEAEGFNRGERINACLSELKHLSGLRTLEVQVSNPSLFPEDDVLFENLNLIRYSILIGYDWQILNDEYKASRRLSLRGVTSLYMVKCFSKLLKRSQELYLCKLNDTKHVVYELDKEGFVELKYLTLEECPTVQYILHSSTSVEWVPPPNTFCMLEELILTWLDNLEAVCHGPIPMGSFGNLRILRLEYCERLKYVFSLPAQYGRESAFPQLQNLYLCGLPELISFYSTRSSGTQESMTFFSQQILLRKVYFKMATFKRIGSVGL* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0838 942 Gene3D - 306 396 IPR042197 -
Vvi10g0838 942 Pfam NB-ARC domain 158 394 IPR002182 GO:0043531
Vvi10g0838 942 Gene3D Ribonuclease Inhibitor 516 911 IPR032675 -
Vvi10g0838 942 FunFam Probable disease resistance protein At1g61300 144 301 - -
Vvi10g0838 942 Coils Coil 41 61 - -
Vvi10g0838 942 SUPERFAMILY L domain-like 478 901 - -
Vvi10g0838 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 408 IPR027417 -
Vvi10g0838 942 PRINTS Disease resistance protein signature 175 190 - -
Vvi10g0838 942 PRINTS Disease resistance protein signature 340 354 - -
Vvi10g0838 942 PRINTS Disease resistance protein signature 247 261 - -
Vvi10g0838 942 PRINTS Disease resistance protein signature 636 652 - -
Vvi10g0838 942 SMART AAA_5 172 308 IPR003593 GO:0016887
Vvi10g0838 942 ProSiteProfiles Leucine-rich repeat profile. 595 616 IPR001611 GO:0005515
Vvi10g0838 942 CDD AAA 183 302 - -
Vvi10g0838 942 Coils Coil 233 253 - -
Vvi10g0838 942 Gene3D - 143 305 IPR027417 -
Vvi10g0838 942 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 21 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0838 Vvi-Chr10 13069267 13073590 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0838 172 494 WRKY Transcription Factor Family AT5G45050 25.449 1.47e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0838 - - vvi:100263454 1811.19