Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0835 ATGAAACATCTATACCATAAACCTGTAAATTTTGGGTGGAGTGACGCAAAATTGCAGATCATCATCCACGCAAAATTGTTGATTGTTGATTTAGAACTCCAAACCCACTCACAAATCCTCCCCCACCAGCCCCCGCCTCCCCCGCCGCGCCCGCGCAGCCCCAATTCCCCCTCTCCGCCGCCGATCTCCTCCTCCTACTACCCCTCCGCGCCGCACATGCTGCTCGCCCTCTCCGCAGGCATCTCCGGCCCCCCTGAGAACGCCCCTCCCATTTCCTCTTCCCCCGCCTCGGGCGCCAACGGGCGGAAACGGTTCCGTACCAAATTCAGCCAAGGGCAGAAGAAGAAGATGTTCGAATTCGCGGAGAGAGTTGGGTGGAAGATGCAGAAGCGAGACGAAGAGCTAGTGGCGGAGTTCTGCAATGAAGTTGGGGTCGACAAAGGAGTTCTAAAGGTGTGGATGCATAACAACAAGAACACCTTCGGCAAACGAGACGTCAATGGCAGCAGAACCAGTCTCGACGAGAACAACGAGAACAACGAGAACACCCCTCACACCATGGAAACCATCCACCATACCCCAACTCACAACCACACCAACCCCTAA 606 0.5545 MKHLYHKPVNFGWSDAKLQIIIHAKLLIVDLELQTHSQILPHQPPPPPPRPRSPNSPSPPPISSSYYPSAPHMLLALSAGISGPPENAPPISSSPASGANGRKRFRTKFSQGQKKKMFEFAERVGWKMQKRDEELVAEFCNEVGVDKGVLKVWMHNNKNTFGKRDVNGSRTSLDENNENNENTPHTMETIHHTPTHNHTNP* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0835 201 NCBIfam homeobox domain, ZF-HD class 102 159 IPR006455 -
Vvi10g0835 201 MobiDBLite consensus disorder prediction 163 201 - -
Vvi10g0835 201 MobiDBLite consensus disorder prediction 40 64 - -
Vvi10g0835 201 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 66 160 - -
Vvi10g0835 201 SUPERFAMILY Homeodomain-like 90 163 IPR009057 -
Vvi10g0835 201 Gene3D - 91 162 - -
Vvi10g0835 201 MobiDBLite consensus disorder prediction 38 64 - -
Vvi10g0835 201 MobiDBLite consensus disorder prediction 79 103 - -
Vvi10g0835 201 FunFam Zinc-finger homeodomain protein 2 91 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0835 Vvi-Chr10 13049537 13050269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0835 102 180 ZF-HD Transcription Factor Family AT5G39760 68.354 4.60e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0835 - - vvi:104880594 286.96