Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0831 ATGTGCCCTCCTCCTGTCTCCACCAGCTCCTGCCGCTCAATGATTAGAGCTCTTCTCTACAAACTTTCTCTCTCTACCATCTTCATTGCTCATTCTCTCTCTAAACATCTTGTTACCGCAACACCAGCTCATACTCGGAGTCAGACTACCAACAAAACAAAAACACCAAACACCGGGCAAAGGAAGAGAACCAGTTGGTGGAAGAAGAAATTTTTTTTTGAGGGAATTTCAAAACATATGTCTACCTCAGATGGAGCGGCTAACGGCGTTACTAACGGCGCTATTGTTGACTCCCAGAGGCAGCAGCAGCCCGGTAACGGGGCCTTGGCGGTAAAGAAGCCGCCGGCCAAGGACCGCCACAGCAAAGTCGACGGTCGGGGCAGGCGTATCCGGATGCCGATCATCTGCGCCGCCAGGGTTTTCCAGTTGACGCGGGAGCTGGGGCACAAATCTGATGGTCAAACTATCGAGTGGCTGCTGCGGCAGGCGGAGCCGTCGATCATAGCGGCCACAGGGACGGGGACCACTCCTGCGAGTTTTTCGAGCGTTTCTGTCTCTGTTCGCGGCGGCGGCTCGACGAGCTCGGCGGCACTGGACCAGAAGCCGTCGCAGCCGCTGCTCAGCCCGACGCCGTTTATTCTCGGGAAGCGTCTACGGGGCGACGACGACGTCGACGGCGGGGCCAAAGATGAGGTGGTCGCTGCCGCGGCTGCTGCTGCCGCCGCCGCCGGTGGTTTCTGGGCGGTTCCGGCGAGACCTGATTTCGGGCAGGTGTGGAGCTTCGCCGCTGCCGCAGCTGCTGCCCCGCCAGAGATGGTGGTGCAGGCGCCGACGATGGCATCGCAGCCGACGATCTCCGGGAGGTTCATGCAGCAGCCGATGGGAGAGGCGTCGGCGGCTAGAGTTGGGAATTATCTTCCGATCGCGCAGGGACATCTGAATTTGCTGGCGTCGTTGTCTGGAGCTCCGGCATCGTCGGGGAGGAGAGACGACGATCCACGTTGA 1005 0.597 MCPPPVSTSSCRSMIRALLYKLSLSTIFIAHSLSKHLVTATPAHTRSQTTNKTKTPNTGQRKRTSWWKKKFFFEGISKHMSTSDGAANGVTNGAIVDSQRQQQPGNGALAVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSVSVRGGGSTSSAALDQKPSQPLLSPTPFILGKRLRGDDDVDGGAKDEVVAAAAAAAAAAGGFWAVPARPDFGQVWSFAAAAAAAPPEMVVQAPTMASQPTISGRFMQQPMGEASAARVGNYLPIAQGHLNLLASLSGAPASSGRRDDDPR* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0831 334 MobiDBLite consensus disorder prediction 42 61 - -
Vvi10g0831 334 MobiDBLite consensus disorder prediction 99 124 - -
Vvi10g0831 334 Pfam TCP family transcription factor 116 200 IPR017887 -
Vvi10g0831 334 ProSiteProfiles TCP domain profile. 116 170 IPR017887 -
Vvi10g0831 334 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 60 262 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0831 Vvi-Chr10 12942744 12943748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0831 91 334 TCP Transcription Factor Family AT5G23280 63.821 3.99e-96 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vvi10g0831 TCP 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0831 K16221 - vvi:100253181 419.853