Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0809 ATGAAGTTGTGTTCCATCTCCTTCTTCCTGCTCCTCTTGTTTCAGAAATCCCTGGCTAAAAATGCTACTCTCGACTCATCTGAAGTGGAAGCATTGAATTTTCTGTTCAACAAATGGAACATGACGTCAACAGAATTTTGGAACATGAGTGGGGATCCATGCAGTGGACCTCCTATTAATCAGAGTCAATACGATGATATTTATTATAGACAAGCTATCAAATGTAATTGCACTTACAATGACAACACCACCTGCCATATCACACATCTGAAAGTACTAAATTTGAACAAAACAGGATTAATTCCAGAGGAGCTCACAGCACTAACTTTTCTTAGTGATTTGAGGCTTAATAAAAATTACTTCACTGGGCCTTTGCCTTTATTTATTGCAAATTTATCTCAAATGCAGTTCATTGATGTTGGCCACAATGCATTATCTGGGACCATTCCTAAGGAGCTTGGAAATCTTAAAGAACTACAAATGTTGGCTATTGGTTCAAATAACTTCTCTGGAACTCTCCCTCCAGAACTTGGAAATCTACCCAAACTTGAGCTGATTTTCATAGACAGCAGTGGAGTGGGTGGTGAGATCCCCTCAACGTTTGTTAAACTTAAAAACATGCGAGAAATGTTTTTATCAGACACTCCACTCACAGGAAAGATACCAGACTTCATAGGGAACTGGACAAAGCTCAAACGACTGAGAATTCAAGGGAACTCTTTTGAAGGTCCAATACCATCCACTTTCTCTCAATTGATCTCAATGGAATCTCTGAGAATAAGTGATCTTGCCAATGTGAGCTCATCTCTTGATTTCATCAAGGATATGAAGAATTTAACAGACTTAGTTCTAAGGAATGCATTGCTCTCTGGTGGTATTCCATCTGATATTGAAGAATACCGCAGTTTAGAAACACTGGATTTGAGTTTCAACAACTTAACAGGAGGAATTCCAAATGCTTTGTTCAACATGAACAATCTCACTGCCTTGTTTCTTGGAAACAATAGCTTCTATGGTTCTCTTCCTGACAAAAAAAGTGATAAGCTTCAAACCATAGATTTGTCATACAATGAGATATCAGGAGGTTTTCCTACATGGATTGATCCAACTTTACAATTGAATTTAGTGGCTAATAACTTTGTATTTGACAACACAAACAACAGTATTTTTGAAGGACTGAACTGTCTTCAGAGGAACTTTCCATGCAACACTCCACGCTATACCAATGTCTCAATCAAGTGTGGTGGACAAGAGGTGACAACGCCTGATGGCATGGTATATGAGTCTGATAATTCAATTCTTGGCACTGCATCAACATCATATTATGTAAGCAGATCAGAGAAATGGGCTGTTAGCAATGTGGGTCTGTATGTTGACAGAATTGCAAATACCTCATCACTAGTTAATGGCACTGACACCCCAGAGCTTTTCAAAACTTCAAGGATATCACCGGGTTCACTTAGATACTATGGCCTGGGTCTCAAGAATGGACCTTATGTTGTAAGTTTGCAATTCGCAGAAATGTTACTTAAGGATCCGAGCACACGAACTTGGGAGAGTACAGGAAGGCGTGTTTTTGATATATATATTCAGGGAGCACTTAAAGAGAAGGACTTTGACATATCAAAAGAGGCAGGTGGGGTCCAGAGAGCAATTGTGAAAAAATTCAATACTACTGTGTCGAAGAACTATCTTGAAATTCATCTGCTTTGGGCTGGTAAGGGTACTTGCTGCATCCCATTTGAAGGTTATTATGGACCATCCATTTCGGCTCTCAGTGTTGTTTCAGCTTTGGAAAGAATGCCACCTCCTCCATCAGAGACAAGCAACACTGGGTTAATTGCTGGCATTGCAGTCACTGCTGGTATTCTATGCTTTATACTCGTATGTGCAGTTTTTTACATCAAAAGGAGAGGGTCTAATTCCAATGAAGAGATAGAGCTTCTTGAAATAGGCCCCATATCGAACACCTTTAGTTATGCGGAGTTGCGAACTGCAACAGAAAACTTCAATCCTACAAATAAGCTAGGGGAGGGTGGATTTGGAGCTGTTTTCAAGGGCACTCTTCTTGATGGGAGGGTAGTAGCTGTGAAGGATCTTATGGTAGCATCTCAACAAGGGAAGAGTCAATTTATAGCAGAGATTGCTACCATATCTGCAGTGCAGCATCGCAACCTCGTGAAGTTGCATGGATTCTGCATCAAAGAAAATAAACGGCTCCTAGTTTATGAGTATCTTGAAAACAAGAGCCTCGATCGTGCTCTCTTTGGGAAAAGTGATTTACATCTTGATTGGCCAACCCGCTTTAATATATGTTTGGGAACAGCGAGAGGGTTAGCTTATCTTCATGAGGAATCAAGGGCAAGAATTGTACACCGGGATGTCAAGGCCAGCAATATTTTGCTTGATGCAGAACTCTGCCCCAAGATATCAGATTTTGGATTGGCAAAGCTGTATGATGACAAGAAAACCCACATCAGTACCCGGGTTGCAGGCACCATTGGCTATCTGGCACCAGAGTATGCAATGCGCGGGCATCTGACAGAGAAGGCTGATGTTTTTGGATTTGGTGTAGTGGCTCTAGAGATCCTCAGCGGGAGACCAAACTCCGACAACAGCTTGGATGCAAGAAAGATGTATCTTCTTGAATGGGCATGGACTTTACACGAAAACAACCAAAGTATGGATTTAGTTGATCCAACATTAACAGAATTTGATGAAAATGAAGTCAGTCGAGTCGTAAGAGTGGCTCTCTTGTGCACCCAGGGATCACCAATGTTGCGGCCAGCCATGTCACGGGTCGTGGCAATGCTTGCTGGAGGCGTTGAAATAAGTGCAGTTACATCAAAACCCAGTTATTTAACAGATTGGGATTTCAATGATATTACAAGCAGCTTTTTGAGCGAAAATACTCGAACATCTACTGCTTCAACAAGTATGACTGACCAACTGCCTTCCCCTATATATCACACTGAACCGATGCTCCTTGGAGTCATTGGAGAAGGGAGGTAA 3012 0.4124 MKLCSISFFLLLLFQKSLAKNATLDSSEVEALNFLFNKWNMTSTEFWNMSGDPCSGPPINQSQYDDIYYRQAIKCNCTYNDNTTCHITHLKVLNLNKTGLIPEELTALTFLSDLRLNKNYFTGPLPLFIANLSQMQFIDVGHNALSGTIPKELGNLKELQMLAIGSNNFSGTLPPELGNLPKLELIFIDSSGVGGEIPSTFVKLKNMREMFLSDTPLTGKIPDFIGNWTKLKRLRIQGNSFEGPIPSTFSQLISMESLRISDLANVSSSLDFIKDMKNLTDLVLRNALLSGGIPSDIEEYRSLETLDLSFNNLTGGIPNALFNMNNLTALFLGNNSFYGSLPDKKSDKLQTIDLSYNEISGGFPTWIDPTLQLNLVANNFVFDNTNNSIFEGLNCLQRNFPCNTPRYTNVSIKCGGQEVTTPDGMVYESDNSILGTASTSYYVSRSEKWAVSNVGLYVDRIANTSSLVNGTDTPELFKTSRISPGSLRYYGLGLKNGPYVVSLQFAEMLLKDPSTRTWESTGRRVFDIYIQGALKEKDFDISKEAGGVQRAIVKKFNTTVSKNYLEIHLLWAGKGTCCIPFEGYYGPSISALSVVSALERMPPPPSETSNTGLIAGIAVTAGILCFILVCAVFYIKRRGSNSNEEIELLEIGPISNTFSYAELRTATENFNPTNKLGEGGFGAVFKGTLLDGRVVAVKDLMVASQQGKSQFIAEIATISAVQHRNLVKLHGFCIKENKRLLVYEYLENKSLDRALFGKSDLHLDWPTRFNICLGTARGLAYLHEESRARIVHRDVKASNILLDAELCPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEILSGRPNSDNSLDARKMYLLEWAWTLHENNQSMDLVDPTLTEFDENEVSRVVRVALLCTQGSPMLRPAMSRVVAMLAGGVEISAVTSKPSYLTDWDFNDITSSFLSENTRTSTASTSMTDQLPSPIYHTEPMLLGVIGEGR* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0809 1003 FunFam Os05g0263100 protein 29 265 - -
Vvi10g0809 1003 SUPERFAMILY Protein kinase-like (PK-like) 655 975 IPR011009 -
Vvi10g0809 1003 CDD STKc_IRAK 676 938 - -
Vvi10g0809 1003 Pfam Protein tyrosine and serine/threonine kinase 673 937 IPR001245 GO:0004672|GO:0006468
Vvi10g0809 1003 Pfam Leucine Rich Repeat 302 322 IPR001611 GO:0005515
Vvi10g0809 1003 FunFam Putative LRR receptor-like serine/threonine-protein kinase 266 388 - -
Vvi10g0809 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672|GO:0006468
Vvi10g0809 1003 Gene3D Transferase(Phosphotransferase) domain 1 746 950 - -
Vvi10g0809 1003 ProSiteProfiles Protein kinase domain profile. 670 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0809 1003 Gene3D Ribonuclease Inhibitor 10 265 IPR032675 -
Vvi10g0809 1003 FunFam Leucine-rich repeat receptor-like protein kinase 640 745 - -
Vvi10g0809 1003 ProSitePatterns Protein kinases ATP-binding region signature. 676 698 IPR017441 GO:0005524
Vvi10g0809 1003 Gene3D - 407 598 - -
Vvi10g0809 1003 SUPERFAMILY L domain-like 68 383 - -
Vvi10g0809 1003 SMART serkin_6 670 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0809 1003 Gene3D Ribonuclease Inhibitor 266 401 IPR032675 -
Vvi10g0809 1003 FunFam Putative LRR receptor-like serine/threonine-protein kinase 746 950 - -
Vvi10g0809 1003 Gene3D Phosphorylase Kinase; domain 1 641 745 - -
Vvi10g0809 1003 Pfam Malectin domain 409 592 IPR021720 -
Vvi10g0809 1003 FunFam Leucine-rich repeat receptor-like protein kinase 407 596 - -
Vvi10g0809 1003 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 973 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0809 Vvi-Chr10 12546011 12562113 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0809 92 265 Receptor kinase-like Gene Family AT1G56120 25.287 6.58e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi10g0809 PK_Tyr_Ser-Thr 2.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0809 - - vvi:100256326 1988