Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0807 ATGATTGCAGGAAAGGGCACTAACACTTCTCGGATTATCCTCATTGCTGTTGTTCCCTCCGTTGGTTTAACATTTATTATCACTCTCATATGCCTTTTCCGGAAGAGGGTTCATAAAGAAAAAGTCGAAATTCCATTTTGTGGAGATGATGATGAAATCACAAGTTCGGAATCTTTACAGTTCAACCTTGACACCATTATAGCTGCAACAAGTGACTTCTCAGATGCTAATAGGCTCGGAAGAGGTGGATTTGGTGATGTTTACAAGGGGGTGCTATCAGATGGAAAAGAAATAGCTGTGAAAAGGCTGTCCAGGAAATCTGACCAAGGTGAACTTGAATTTAAGAATGAAGTTCTATTATTAGCCAAGCTTCAACACAGAAATTTGGTTAGGCTCCTAGGCTTTTGCCTAGCAGGAGAGGAAAGACTTCTCATCTATGAGTTTTTGCCCAAGTCAAGCCTTGATCACTTCATATTTGATCCAATCAATAGAGCACAGCTGGATTGGGATAAACGTTATAAAATCATAGAAGGCATTGCTCGTGGTCTTCTTTATCTTCATGAAGATTCTCATTTTCAGATAATCCATCGTGATCTCAAAGCAAGCAACATTCTCTTAGATGCAAATATGAACCCTAAAATTTCAGATTTTGGTATGGCAAAGTTATTCACAACGGATCAAAGTCATGCTAAAGCAAGTAGAATTGCGGGTACCTAG 717 0.3919 MIAGKGTNTSRIILIAVVPSVGLTFIITLICLFRKRVHKEKVEIPFCGDDDEITSSESLQFNLDTIIAATSDFSDANRLGRGGFGDVYKGVLSDGKEIAVKRLSRKSDQGELEFKNEVLLLAKLQHRNLVRLLGFCLAGEERLLIYEFLPKSSLDHFIFDPINRAQLDWDKRYKIIEGIARGLLYLHEDSHFQIIHRDLKASNILLDANMNPKISDFGMAKLFTTDQSHAKASRIAGT* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0807 238 Pfam Protein kinase domain 74 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0807 238 FunFam Cysteine-rich receptor-like protein kinase 17 45 148 - -
Vvi10g0807 238 FunFam Os07g0541700 protein 149 238 - -
Vvi10g0807 238 ProSitePatterns Protein kinases ATP-binding region signature. 79 101 IPR017441 GO:0005524
Vvi10g0807 238 Gene3D Phosphorylase Kinase; domain 1 37 148 - -
Vvi10g0807 238 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vvi10g0807 238 SUPERFAMILY Protein kinase-like (PK-like) 55 238 IPR011009 -
Vvi10g0807 238 ProSiteProfiles Protein kinase domain profile. 73 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0807 238 SMART serkin_6 73 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0807 238 Gene3D Transferase(Phosphotransferase) domain 1 149 238 - -
Vvi10g0807 238 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0807 Vvi-Chr10 12449952 12451181 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0807 51 238 Receptor kinase-like Gene Family AT4G11530 67.553 3.78e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi10g0807 Pkinase 7.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0807 - - vvi:100244284 465.307