Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0804 ATGGCCATTTTCTCAGAACGAGCAATTGTGCTACTCTTCTTTCTTTCTTCTCTTATCATCCATGGAAGCCCAAAGCCTGACCTCTTCTACAGCCTTTGTACTGAAAATGGCAACTATGAACCCAATAGCACTTACCAGTATAACCTCAACCTCCTCCTCACTTCCCTGTCGTCAAATGCTGCAACACTTAACGGCCGCAAATTCCACAACCAGACGGCAGGCCAAGCGCCAGACATGGTATATGGCCTCTACCTATGCAGGGGGGATGTCACAGACGCAGTATGCCAGAACTGCGTCCAGACTGCAAGTCAAGAGATTCTGACCAAGTGTCCCAACAGAAAAGAGGTAATCAGTTGGTACGACCAGTGCATGTTTCGGTACTCCAACCGATCAATCTTCTCAATAATGGAAGAAAGGCCAAGTGTGACTGGGTCTAACGAATTGGAGATGGAGGACCCAGATAGGTTTGATCAGATTGTGAATGAAACCATGGTGGGTATGATTGAAAAGGCTACCTATAATTCTTCTGAGAGAGACATGTTTGAGACTGGAGAAGCAAAATTTAATGCGTCCACCAAGATATATGGTTTGGCGCAGTGCACACCAGATTTATCCGGCAGCGATTGTAGGAGGTGCCTTGAAAATATTTTTTCTCGTATTCCTAATTGTTGCTATGGGAAGCAAGGGGCCAGGATTCTAGGACCAAGCTGCAACTTCAGGTACGAGGTGTACCCTTTCTATGGAGACTTTGCAGCTGCTGCACCGCTTGCACCTTCACCTCTGTCACCTCCAGAAGGAAGCAAAAGTGACTCCACGCCAAGTGCTTTTGGGGAAGATAGTCAAAGCATGGACTCGACCATGGATTCACTACTCTTTGATTTGAAGACACTTAGAGCTGCCACTAACAACTTCTCTGATGCTAATAAGATTGGTGAAGGGGGCTTTGGAGCTGTTTACAAGGGTCTACTTTCAAGTGGACTAGAGATAGCTATAAAAAGGCTCTCAAGAAATTCAGGGCAAGGGACAGAAGAATTCAAGAATGAAATTGCATTACTTGCTAAACTTCAACATAGGAATCTTGTTCGCCTTTTGGGGTTTTGCTTGGAAGCAAAAGAGAAAATACTCGTCTATGAGTTTGTGCCCAATAAAAGCCTCGACTACTTTCTATTTGATACTGACAAACAATCACAGTTGGATTGGCCTACACGACACAAGATTATAGTGGGTATTGCTCGAGGACTACTTTACCTGCATGAGGAATCTAGGTTGAAGATCATTCACCGTGATCTTAAAGCTAGCAACATATTATTGGACTCCAAGTTGAATCCCAAAATTTCTGACTTTGGCATGGCAAGGATTTTCTTTATGGAGCAAAGTCAAGCAAATACAACGAGGATTGTAGGGACATATGGTTACATGTCTCCTGAGTATGCAATGCATGGACAATTTTCAGTGAAGTCAGATGTGTTCAGTTTTGGTGTTTTGCTTCTAGAGATACTAAGCGGCAAGAAGAATAGTTGTTTCAACAACTCAGAGTGCAGCCAGGACCTTCTAAGCTATGCTTGGAGACAGTGGAAGGATCGAACAGCTCTGGAACTGATAGATCCAATTGTGGGAGGAGAGTATTCAAGAAGTGAAGTAATGAGATGCATCCATATTGGGTTATTATGTGTTCAAGAAGATGCAGCTGACAGACCCACAATGGCATCAGTAGCTCTCATGCTAAACAGCTATTCTGTTACTCTCCCTTTGCCTTCAAAACCCGCCTTCTTCCTTCATTCTAAAAAGGAATCCAATCCATCCACCAGCAAATCTGTATCGATGTCCGTAGATGAAGGGTCGATCACTGAAGTGTATCCTAGATGA 1866 0.4384 MAIFSERAIVLLFFLSSLIIHGSPKPDLFYSLCTENGNYEPNSTYQYNLNLLLTSLSSNAATLNGRKFHNQTAGQAPDMVYGLYLCRGDVTDAVCQNCVQTASQEILTKCPNRKEVISWYDQCMFRYSNRSIFSIMEERPSVTGSNELEMEDPDRFDQIVNETMVGMIEKATYNSSERDMFETGEAKFNASTKIYGLAQCTPDLSGSDCRRCLENIFSRIPNCCYGKQGARILGPSCNFRYEVYPFYGDFAAAAPLAPSPLSPPEGSKSDSTPSAFGEDSQSMDSTMDSLLFDLKTLRAATNNFSDANKIGEGGFGAVYKGLLSSGLEIAIKRLSRNSGQGTEEFKNEIALLAKLQHRNLVRLLGFCLEAKEKILVYEFVPNKSLDYFLFDTDKQSQLDWPTRHKIIVGIARGLLYLHEESRLKIIHRDLKASNILLDSKLNPKISDFGMARIFFMEQSQANTTRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVLLLEILSGKKNSCFNNSECSQDLLSYAWRQWKDRTALELIDPIVGGEYSRSEVMRCIHIGLLCVQEDAADRPTMASVALMLNSYSVTLPLPSKPAFFLHSKKESNPSTSKSVSMSVDEGSITEVYPR* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0804 621 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 616 - -
Vvi10g0804 621 FunFam Cysteine-rich receptor-like protein kinase 10 267 379 - -
Vvi10g0804 621 SUPERFAMILY Protein kinase-like (PK-like) 287 604 IPR011009 -
Vvi10g0804 621 FunFam Cysteine-rich receptor-like protein kinase 10 140 246 - -
Vvi10g0804 621 FunFam cysteine-rich receptor-like protein kinase 10 380 582 - -
Vvi10g0804 621 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 26 132 - -
Vvi10g0804 621 MobiDBLite consensus disorder prediction 264 283 - -
Vvi10g0804 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Vvi10g0804 621 MobiDBLite consensus disorder prediction 596 621 - -
Vvi10g0804 621 Pfam Protein tyrosine and serine/threonine kinase 308 572 IPR001245 GO:0004672|GO:0006468
Vvi10g0804 621 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Vvi10g0804 621 MobiDBLite consensus disorder prediction 596 612 - -
Vvi10g0804 621 Gene3D - 26 131 IPR038408 -
Vvi10g0804 621 Gene3D - 141 246 IPR038408 -
Vvi10g0804 621 MobiDBLite consensus disorder prediction 258 283 - -
Vvi10g0804 621 ProSiteProfiles Gnk2-homologous domain profile. 138 246 IPR002902 -
Vvi10g0804 621 Gene3D Transferase(Phosphotransferase) domain 1 380 582 - -
Vvi10g0804 621 CDD STKc_IRAK 310 576 - -
Vvi10g0804 621 ProSiteProfiles Gnk2-homologous domain profile. 27 132 IPR002902 -
Vvi10g0804 621 Gene3D Phosphorylase Kinase; domain 1 271 379 - -
Vvi10g0804 621 ProSiteProfiles Protein kinase domain profile. 304 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0804 621 SMART serkin_6 304 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0804 621 Pfam Salt stress response/antifungal 33 129 IPR002902 -
Vvi10g0804 621 Pfam Salt stress response/antifungal 151 243 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0804 Vvi-Chr10 12423832 12427411 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0804 14 621 Receptor kinase-like Gene Family AT4G05200 46.697 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi10g0804 PK_Tyr_Ser-Thr 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0804 - - vvi:100259667 1206.82