LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi10g0797	ATGAATGTTACAGTGAAAAGAGCATCTGCTTCACCCTCTCTTCCCCGCTGCCCTTCCATCATCATCCTCTTCTTCTTGTTGTGGCTATTCTTGTTATTTCAGGAATCAACTGCTGAAAATGCTACCCTGGACCCATCTGAAGCTGAAGCATTGAACTCAATATTCCAACAATGGGATACACAGTCGGTGGCATTGTGGAACATCAGTGGGGAGCCATGCACCGGATCAGCCATTAACGGCACAGCATTTGAGAGCGACGATAATAATCCAGCTATCAAGTGTGATTGTTCTTACGACAGTGGTACTACCTGCCACATTACTCAGCTGAGAGTGTATGCTTTGAACAAAAAAGGAGTAATTCCAGAGGAACTTGCAACTTTGACTTATCTTACCTTTTTGAAGATTGATCAAAATTACTTCACAGGTCCCTTGCCTTCATTTATCGGAAATTTATCTAAATTATCGTTATTATCAATTGCCCATAATGCATTTTCTGGGACCATCCCAAAGGAGCTTGGAAATCTTACGGAACTAGAAGTGTTGTCTTTGGGTTCAAATAACTTCTCTGGAAACCTTCCTCCAGAATTGGGAAATCTATCCAAACTTCGTGAACTTTACATAAATAGTTGTGGAGCGGGTGGTGAGATTCCCTCAACATTTGCTGAACTTCTAAATCTGCAAGTCATGGAAGGTTCAGACAGTCCATTCACAGGAAAAATACCAAATTTCATTGGGAACTTCACAAGACTTACATCTTTGAGATTCCAAGGGAACTCTTTTGAAGGTCCAATACCATCCAGCTTCTCTAAATTGATCTCATTGAGCTCACTGCGAATAAGTGACCTATACAATGTGAGCTCATCTCTTGATTTCATAAGAGATTTGAAGAATTTAACCGACTTAAATCTAAGAAATGCATTGATCTCTGGTAGTATTCCATCTTTCACTGGAGAATTCCAGAAGTTACAAAGACTGGATTTGAGTTTCAATAACTTAACAGGCGAAGTCCCCAGCTCTCTATTCAACTCGAGTGCTCTTACTGACTTGTTTCTTGGAAACAATAGCCTCTCTGGAAGTCTTCCAGCCCAAAAAAGTGAAGAACTTAAAAATATAGATTTGTCTTATAATCAACTCTCGGGAAGTTTTCCATCATGGGTAACCTCAGCCTCAGGTTTGCAGTTGAATTTAGTGGCAAACAACTTTATATTTGGTAGCTCAAACAGCAGTTTTTTCCAAGGATTGAACTGTCTCCAGAGAAACTTCCCTTGCAATAGGAATACTCCACTCTATGCCAACTTCTCAGTCAACTGTGGTGGCCAAGAGATGAGAATTGCTGATGGCACAGTGTATGAGGTTGACAACTCCTCTCTTGGTGCAGCATCGTATTATGTAACTAATACAGAGAAATGGGCAGTTAGCAATGTGGGGTTGTTTTCTGATAGTAGTAATCCAGCATATCTGGAGAACAACTTGAAGCAAGTTGCAGACACTAGCACCCCAGAGCTTTTCCAGACTTCAAGAGTATCACCGGGGTCACTTAGATACTATGGCCTGGGTCTGGAAAACGGTAACTACACTGTAAGTTTGGAATTTGCAGAAACAAAATTTGCATCTCGAAGCACAGAAACTTGGGAGAGTCTGGGAAGGCGTGTGTTTGATATTTATATTCAGGGAAGTCTTCAGTTGAAGGACTTTGACATATCAAAAGAGGCAGGTGGGGTTGACAAGGCTCTTGAGAAAAAATTCAATGCTACGGTGTCAGAGAACTATCTCGAAATTCATCTGTTTTGGGCTGGTAAGGGAACTTGCTGCATACCAGTCCAAGGTTATTACGGGCCATCCATTTCAGCCCTGAGTGTTGTTTCTGATTTCACACCAAGTGTCAGTGGAATTCCATCAATTCCTCCCTCAAAGAAGAACAATACTGGGTTGATTGTTGGTGTTGTAGTTGCTGTTGGGTCTGTAAGCTTCATACTGATATGTGCTGTTTTTTACATGAAAATGAGAGCATCAAATATCAATGAAGATGAAGAGCTTCTTGGAATAGGCCCCAGACCAAACACTTTTACTTATGCAGAGTTGAGAACTGCAACCGAAGACTTCAATCCTACAAATAAGCTTGGGGAGGGTGGATTTGGACCTGTCTACAAGGGCAAGCTTAATGATGAGAGGGCAGTAGCTGTGAAGCAACTTTCAGTAGCATCTCACCAAGGAAAGAGTCAGTTTATTACAGAGATTGCTACCATATCTGCAGTGCAACATCGTAACCTAGTGAAGTTGTATGGATGCTGCATTGAAGGAGACAAACGACTTTTGGTTTATGAATATCTTGAAAACAAGAGCCTTGATCAGGCTCTTTTTGGGAAAAATGATTTGCATCTTGATTGGGCGACCCGCTTCAATGTATGCATGGGAACAGCTAGGGGTTTAGCTTATCTTCACGAAGAATCAAGGCCAAGGATCGTACATAGGGATGTTAAGGCTAGTAATATTCTCCTTGATGCAGAACTTTGCCCCAAGATATCAGATTTCGGATTGGCAAAGCTGTATGATGACAAGAAAACACACATTAGCACCCGAGTTGCAGGCACTATCGGCTACCTAGCCCCAGAGTATGCAATGCGCGGGCATCTAACAGAAAAGGCCGATGTCTTCGGATTTGGGGTTGTTGCTTTAGAGATCCTCAGTGGGAGACCAAACTCTGATAACAGCTTGGAGACAGAAAAGATCTATCTTCTTGAATGGGCATGGACTCTACATGAAAGTAACCGAGGTTTGGAGTTGGTGGATCCAACATTAACCGCATTTGATGAAGATGAAGCCAACCGAATCATTGGAGTGGCTCTCTTGTGCACCCAGTCGTCACCATTGCTGAGGCCAACCATGTCACGAGCTGTGGCAATGCTTGCAGGAGACATTGAAATAAGCGCAGTTACCGTAAAACCCAGTTATTTAACAGATTGGGATTTCAAAGATATTACTAGTGAGCTTCTGGACGAGGGAGATACTCAAATATCTGTTGCTTCTAAGAATGGCAGTGCCCACGATCATGGACAGTATTATAATGATGATGCAAGTAAGCTGGCGCCTTCCCCCATAAATTTCACTGAGCCCACGCTCCATGAGGTTGTTGGAGATGGAAGATGA	3147	0.4236	MNVTVKRASASPSLPRCPSIIILFFLLWLFLLFQESTAENATLDPSEAEALNSIFQQWDTQSVALWNISGEPCTGSAINGTAFESDDNNPAIKCDCSYDSGTTCHITQLRVYALNKKGVIPEELATLTYLTFLKIDQNYFTGPLPSFIGNLSKLSLLSIAHNAFSGTIPKELGNLTELEVLSLGSNNFSGNLPPELGNLSKLRELYINSCGAGGEIPSTFAELLNLQVMEGSDSPFTGKIPNFIGNFTRLTSLRFQGNSFEGPIPSSFSKLISLSSLRISDLYNVSSSLDFIRDLKNLTDLNLRNALISGSIPSFTGEFQKLQRLDLSFNNLTGEVPSSLFNSSALTDLFLGNNSLSGSLPAQKSEELKNIDLSYNQLSGSFPSWVTSASGLQLNLVANNFIFGSSNSSFFQGLNCLQRNFPCNRNTPLYANFSVNCGGQEMRIADGTVYEVDNSSLGAASYYVTNTEKWAVSNVGLFSDSSNPAYLENNLKQVADTSTPELFQTSRVSPGSLRYYGLGLENGNYTVSLEFAETKFASRSTETWESLGRRVFDIYIQGSLQLKDFDISKEAGGVDKALEKKFNATVSENYLEIHLFWAGKGTCCIPVQGYYGPSISALSVVSDFTPSVSGIPSIPPSKKNNTGLIVGVVVAVGSVSFILICAVFYMKMRASNINEDEELLGIGPRPNTFTYAELRTATEDFNPTNKLGEGGFGPVYKGKLNDERAVAVKQLSVASHQGKSQFITEIATISAVQHRNLVKLYGCCIEGDKRLLVYEYLENKSLDQALFGKNDLHLDWATRFNVCMGTARGLAYLHEESRPRIVHRDVKASNILLDAELCPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEILSGRPNSDNSLETEKIYLLEWAWTLHESNRGLELVDPTLTAFDEDEANRIIGVALLCTQSSPLLRPTMSRAVAMLAGDIEISAVTVKPSYLTDWDFKDITSELLDEGDTQISVASKNGSAHDHGQYYNDDASKLAPSPINFTEPTLHEVVGDGR*	1049

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi10g0797	1048	FunFam	Os05g0263100 protein	48	284	-	-
	Vvi10g0797	1048	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	821	833	IPR008271	GO:0004672\|GO:0006468
	Vvi10g0797	1048	Gene3D	Ribonuclease Inhibitor	44	284	IPR032675	-
	Vvi10g0797	1048	ProSiteProfiles	Protein kinase domain profile.	701	958	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi10g0797	1048	SUPERFAMILY	Protein kinase-like (PK-like)	682	969	IPR011009	-
	Vvi10g0797	1048	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	285	409	-	-
	Vvi10g0797	1048	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	777	981	-	-
	Vvi10g0797	1048	Pfam	Protein tyrosine and serine/threonine kinase	704	909	IPR001245	GO:0004672\|GO:0006468
	Vvi10g0797	1048	Pfam	Malectin domain	433	618	IPR021720	-
	Vvi10g0797	1048	CDD	STKc_IRAK	707	969	-	-
	Vvi10g0797	1048	FunFam	Leucine-rich repeat receptor-like protein kinase	671	776	-	-
	Vvi10g0797	1048	Gene3D	Phosphorylase Kinase; domain 1	672	776	-	-
	Vvi10g0797	1048	Gene3D	-	431	624	-	-
	Vvi10g0797	1048	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	22	1001	-	-
	Vvi10g0797	1048	Gene3D	Transferase(Phosphotransferase) domain 1	777	980	-	-
	Vvi10g0797	1048	Gene3D	Ribonuclease Inhibitor	285	421	IPR032675	-
	Vvi10g0797	1048	SMART	serkin_6	701	958	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi10g0797	1048	FunFam	Leucine-rich repeat receptor-like protein kinase	430	622	-	-
	Vvi10g0797	1048	SUPERFAMILY	L domain-like	94	418	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi10g0797	Vvi-Chr10	12172610	12204378	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi10g0797	154	995	Receptor kinase-like Gene Family	AT1G56120	58.719	0.0	1019

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vvi10g0797		PK_Tyr_Ser-Thr	4.9e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi10g0797	-		-	vvi:100256223	2022.28