Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0795 ATGTATAATATTTTCAGGAGAGTACATGCTTTGAACAAAAGGGGAGTAATTGTAGAGGAGTTCAAGGCCTTTACTTATCTCATGGTTTTGAAGCTCGATAAGAATTACTTCACAGGTCCCCTACCTTCATTTATTGGAAACTTATCTCAATTGACTTATTTGTCAGTCTCGCATAATGCACTCTCTGGGACCATTCCTAAGGAGCTTGGAAATCTGAAGGAACTTCTAATGTTGTCTATTGGTTCAAATAACTTCTCTGGAACTCTCCCTCCAGAAATTGGAAATCTAGTCAAACTTCAGCAAATTTACATTGACAGCAGTGGAGTGAGTGGGGAGATACCCTCTACATTTGCTAAACTTCAAGACATGGTAGTCATGTTTGCAACAGATGTTCCTATCACAGGAAAGATACCAGACTTCATCGGGAACTGGACAAAGCTTGAGTCTCTGAGATTTCAAGGGAACTCTCTCGAAGGTCCAATACCATCAAGTTTTTCTAAATTGACTTCATTGACCACTTTGCGAATAAGTGATTTATCCAATGTGAGCTCATCTCTTGATTTCATCAAGGAAATGAAGAATTTAACTGACCTAGTTCTCAGAAACTCATTGATATCTGGTAGTATTCCATTTTATATTGGAGAATTTCAAAGTTTAAAAACACTGGATTTGAGTTTCAACAACTTAACAGGTGAAATCCCGGATGCTTTGTTCAACTTGAGTTCTCTCACTTCCCTATTTCTTGGAACCAATAGACTTTCTGGAACTTTCCCTGCCCAAAAAAGTGAACAACTTCAAACTATAGATTTGTCATACAATGAGTTATCAGGAAGTTTTCCTTCATGGCTAAAGTCAGGTTTACAATTTATTTTTGAAGGATTGGAATGTCTTCAAAGAAACTTTCCTTGCAACAGGGATCCTCCACCCTATACCAATGTCTCAATCAAGTGTGGTGGGCCAGAGTGGAGAACACCCGATGGCACTGTATATGAGGCTGATAACTCAATTACCACTGGTACTGCTTCAACATCGTATTATGTAAGCAGATTAGAGAATTGGGGAGTTAGCAATGTGGGTTTGTATAGTGATAGAATTGCATATAAGACGGAAGTTAGTGGGACTAACCACCCAGAACTTTTCAAGACTTCAAGGATATCACCAGGCTCACTTAGATACTATGGCCTCGGTCTGCAGAATGGACATTACACTGTAAGTTTGCAATTTGCAGAAATGGAACTTAAAGATCAAAGTGCACAAACTTGGGAAAGTATAGGAAGGCGTGTTTTTGATATCTATATTCAGGGAACTCTTCAATTAAAGGACTTTGACATAACAAAGGAGGCAGGTGGGGTTGAGAGAGCAATAGAGAGAAAATTCAATGCTGTTGTGTCACAGAACTATCTTGAAATTCACCTGTTTTGGGCTGGTAAGGGCACTTGCTGCATACCATTTGAAGGTTATTATGGACCATCCATTTCAGCCCTCAGTGTTGTTTCAGATTTGAAAAGAGTTCCAACAACTACTCCACCAAAGAAGGGCTACACTGGTTTGATTGCTGGAATTGTAGCTGCCATTGGGATTCTGAGTTTTATACTTATTATATGTGCAGTTTTTTACGTGAAATGGAAAGCATCGAATCTCAACAAGGATATAGTGCTTCTTGGAGTAGGCCCTCGACCAAACACTTTTCGTTATGCTGAGTTGCGAACTGCAACAGAAAATTTTAGTGCCACAAATAAGCTAGGGGAGGGTGGATTTGGATCTGTTTACAAGGGCACTCTTCCTGATGGGAGGGTAGTAGCTGTAAAGGAACTTACAGTAGCGTCTCAACATGGGAAGAGCCAATTTATAACAGAGATTGCTACCATATCTGCAGTGCAACATCGGAACCTTGTGAAATTGTATGGATTTTGCATCAAAGGAAACAGACGTCTCCTGGTTTATGAATATCTTGAAAACAGGAGCCTTGATCATTCTCTCTTTGGGAAAAACAATTTGCATCTTGATTGGCCAACCCGCTTCAATGTATGCTTGGCAACAGCAAGAGCATTAGCTTATCTTCACGAAGAATCAAGGCCAAGGATAGTACACCGAGATGTCAAGGCTAGTAATATTTTGCTGGATGAAGACCTCTGCCCCAAGATATCTGATTTTGGATTGGCAAAGTTGTATGATGACAAGAAAACCCACATCAGCACCCGAATTGCAGGCACCATTGGCTATCTAGCACCAGAGTATGCAATGCGCGGGCACCTGACAGAAAAGGCTGATGTCTTCAGTTTTGGAGTCGTTGCTCTAGAGATCCTGAGTGGAAGACCAAATACTGATAATAGCTTGGATGCCAAAATGATATATCTTCTTGAATGGGCATGGGCTTTACATGAAAACAACCGAAGCTTGGATCTGATTGATCCAAGATTAACTGCATTTGATGAAAATGAAGCCATACGAGTAGTAGGAGTGGCTCTCTTGTGCACCCAAGCATCACCAGTGTTGCGGCCAACCATGTCGAGGGTTGTTGCAATGCTTGCAGGAGACATTGAAGTAAGCACAGTTGCATCAAAACCCAGTTATTTAACAGATTGGGATTTCAATGATGCTACGAGTAGCTTTTTGAGTGAAGATACTCAAACTTCTTCTGCATTTAATAAGAGTGCAAGTAATCCCACATCTTTTGCATCTAATAAGAGTACAAGTAATCCGACATCTTTTGCATCTAATAAGGGTACAAGTAATCCAACGCCTTCCCCTGTAAATATCTCTGAACCAATGCTCCATGGAATTATTGGAGCAGGAAGGTGA 2802 0.4047 MYNIFRRVHALNKRGVIVEEFKAFTYLMVLKLDKNYFTGPLPSFIGNLSQLTYLSVSHNALSGTIPKELGNLKELLMLSIGSNNFSGTLPPEIGNLVKLQQIYIDSSGVSGEIPSTFAKLQDMVVMFATDVPITGKIPDFIGNWTKLESLRFQGNSLEGPIPSSFSKLTSLTTLRISDLSNVSSSLDFIKEMKNLTDLVLRNSLISGSIPFYIGEFQSLKTLDLSFNNLTGEIPDALFNLSSLTSLFLGTNRLSGTFPAQKSEQLQTIDLSYNELSGSFPSWLKSGLQFIFEGLECLQRNFPCNRDPPPYTNVSIKCGGPEWRTPDGTVYEADNSITTGTASTSYYVSRLENWGVSNVGLYSDRIAYKTEVSGTNHPELFKTSRISPGSLRYYGLGLQNGHYTVSLQFAEMELKDQSAQTWESIGRRVFDIYIQGTLQLKDFDITKEAGGVERAIERKFNAVVSQNYLEIHLFWAGKGTCCIPFEGYYGPSISALSVVSDLKRVPTTTPPKKGYTGLIAGIVAAIGILSFILIICAVFYVKWKASNLNKDIVLLGVGPRPNTFRYAELRTATENFSATNKLGEGGFGSVYKGTLPDGRVVAVKELTVASQHGKSQFITEIATISAVQHRNLVKLYGFCIKGNRRLLVYEYLENRSLDHSLFGKNNLHLDWPTRFNVCLATARALAYLHEESRPRIVHRDVKASNILLDEDLCPKISDFGLAKLYDDKKTHISTRIAGTIGYLAPEYAMRGHLTEKADVFSFGVVALEILSGRPNTDNSLDAKMIYLLEWAWALHENNRSLDLIDPRLTAFDENEAIRVVGVALLCTQASPVLRPTMSRVVAMLAGDIEVSTVASKPSYLTDWDFNDATSSFLSEDTQTSSAFNKSASNPTSFASNKSTSNPTSFASNKGTSNPTPSPVNISEPMLHGIIGAGR* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0795 933 Pfam Protein tyrosine and serine/threonine kinase 577 841 IPR001245 GO:0004672|GO:0006468
Vvi10g0795 933 Gene3D - 310 501 - -
Vvi10g0795 933 FunFam Putative LRR receptor-like serine/threonine-protein kinase 651 855 - -
Vvi10g0795 933 Gene3D Phosphorylase Kinase; domain 1 554 650 - -
Vvi10g0795 933 Pfam Malectin domain 312 495 IPR021720 -
Vvi10g0795 933 FunFam Os05g0256100 protein 2 181 - -
Vvi10g0795 933 SMART serkin_6 575 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0795 933 FunFam Leucine-rich repeat receptor-like protein kinase 310 499 - -
Vvi10g0795 933 MobiDBLite consensus disorder prediction 880 933 - -
Vvi10g0795 933 FunFam Leucine-rich repeat receptor-like protein kinase 545 650 - -
Vvi10g0795 933 SUPERFAMILY L domain-like 18 283 - -
Vvi10g0795 933 Gene3D Transferase(Phosphotransferase) domain 1 651 855 - -
Vvi10g0795 933 FunFam Putative LRR receptor-like serine/threonine-protein kinase 182 297 - -
Vvi10g0795 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Vvi10g0795 933 ProSiteProfiles Protein kinase domain profile. 575 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0795 933 ProSiteProfiles Leucine-rich repeat profile. 218 241 IPR001611 GO:0005515
Vvi10g0795 933 Pfam Leucine Rich Repeat 146 168 IPR001611 GO:0005515
Vvi10g0795 933 Gene3D Ribonuclease Inhibitor 11 182 IPR032675 -
Vvi10g0795 933 Gene3D Ribonuclease Inhibitor 183 294 IPR032675 -
Vvi10g0795 933 CDD STKc_IRAK 581 843 - -
Vvi10g0795 933 Pfam Leucine rich repeat 194 253 IPR001611 GO:0005515
Vvi10g0795 933 Pfam Leucine rich repeat 26 85 IPR001611 GO:0005515
Vvi10g0795 933 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 879 - -
Vvi10g0795 933 ProSitePatterns Protein kinases ATP-binding region signature. 581 603 IPR017441 GO:0005524
Vvi10g0795 933 SUPERFAMILY Protein kinase-like (PK-like) 559 877 IPR011009 -
Vvi10g0795 933 MobiDBLite consensus disorder prediction 880 919 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0795 Vvi-Chr10 12136707 12150437 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0795 51 882 Receptor kinase-like Gene Family AT1G56120 55.052 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi10g0795 PK_Tyr_Ser-Thr 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0795 - - vvi:100259563 1805.42