Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0792 ATGAGCATCATATTGATATGTGCAGTTCTTTACATAAAAAGGAAAGCTTCCTATCTCAATGAGGATGAAGAGTTTCTTGGAATAGGCCCTAGACCAAACACTTTCAGTTCTTCAGAGTTAGAAACTGCAACAGAAGACTTCAATCTTGCAAATAAGCTAGGGGAGGGTGCATTTTGGCCTGTGTACAAGGGCGCTCTTAATGATGGGAGGGTAGTAGCTGTAAAGCAACTTTCAGTAGCATCTCAACAAGGGAAGAGTCAATTTGTGGCAGCGATTGCTGCCATATCTGCAGTGCAGCACCGCAACCTTGTGAAGTTGTATGGGTGCTGTATTGAAGGAAATAGATGGCTCCTTGTTTATGAACATCTTGAAAACAAGAGCTTAGATCAGGCTCTCTTTGGCAAAAATGATTTGTATCTTGATTGGTCAATCCGCTTCAATACATGCTTAGGAACAGCTAGAGGGTTGGCTTATCTTCATGAAGACTCAAGGCCAAGGACTGTACACAGGGATGTTAAGGCTAGTAGCATTCTCCTTGATGCAAAGCTCTGCCCAAAAATATCAGATTTTGGACTGGCAAAGCTGTATGATGACAAGAAAACACACATCAGCGGCCGAGTTGCAGGCACAATTGGCTACCTAGCACCAGCGTATGCAATGCGAGGGCATCTGACAGAAAAAGCTGATGCCTTTGGATTCGGTGTTGTTGCTCTAGAGATCCTCAGTGGGAGGCCAAACTCTGATAACAGCTTGGATACTGAAAAAATATATCTTCTGGAATGGGCATGGACTCTACATGAAAATAACCGAAGCTTGGAGCTGGATCCAACATTGACAGCATTTGATGAAACCGAAGCCAGTCAAATCATAGGAGTGGCTCTCTTGTGCACCCAGGCATCACCAATGCTGCGGCCAACAATGTCACGTATTGCAGCAATGCTTGCAGGAGGCATTGATGTAGGCATAGTTACAGCAAAACCCAGTTACTTAACAGATTGA 999 0.4414 MSIILICAVLYIKRKASYLNEDEEFLGIGPRPNTFSSSELETATEDFNLANKLGEGAFWPVYKGALNDGRVVAVKQLSVASQQGKSQFVAAIAAISAVQHRNLVKLYGCCIEGNRWLLVYEHLENKSLDQALFGKNDLYLDWSIRFNTCLGTARGLAYLHEDSRPRTVHRDVKASSILLDAKLCPKISDFGLAKLYDDKKTHISGRVAGTIGYLAPAYAMRGHLTEKADAFGFGVVALEILSGRPNSDNSLDTEKIYLLEWAWTLHENNRSLELDPTLTAFDETEASQIIGVALLCTQASPMLRPTMSRIAAMLAGGIDVGIVTAKPSYLTD* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0792 332 Pfam Protein tyrosine and serine/threonine kinase 48 313 IPR001245 GO:0004672|GO:0006468
Vvi10g0792 332 ProSiteProfiles Protein kinase domain profile. 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0792 332 Gene3D Phosphorylase Kinase; domain 1 20 122 - -
Vvi10g0792 332 SUPERFAMILY Protein kinase-like (PK-like) 30 314 IPR011009 -
Vvi10g0792 332 Gene3D Transferase(Phosphotransferase) domain 1 123 320 - -
Vvi10g0792 332 FunFam Leucine-rich repeat receptor-like protein kinase 17 122 - -
Vvi10g0792 332 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 328 - -
Vvi10g0792 332 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0792 Vvi-Chr10 12080997 12082934 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0792 1 332 Receptor kinase-like Gene Family AT1G56120 63.964 3.78e-149 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi10g0792 PK_Tyr_Ser-Thr 9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0792 - - vvi:100261421 598.586