Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0779 ATGAGCTTGAATCAGGGAAGATCTTATCTTCACTTGCAACATTCAGAATACTTCAACAACCCATCTACAGTCTTCCTGACCTCAATGATAGCTCAGACTAAAGTATCCCTTGACAGAATTACATCCTTTCTTCATCTCGATGACTTGCAGAGTGATGTCATTGAGAGGCTTCCAAAAGGTAGTTTTGGTATAGCAATTGAGATAGAGGATGAGAATTTCTCTTGGGATTTATCTTCCCCTAATCCAACGCTGAAGGATATTAATTTGCGAGTGTGCCGTGGCATGAGGGTTGCTGTTTGTGGTACTGTAGGCTCAGGTAAGTCAAGTTTACTCTCCTGTATGATGGGAGAGGTGCCTAAGATATCTGGTATCCTTAAGCTGTGTGGAACAAAGGCATATGTTGCTCAGTCTCCTTGGATACAGAGTGGCAAGATGGCAGAGAACATCTTGTTTGGTAAGGAGATGGACAGAGAAAGGTATGAAAGGGTCCTTGATGCATGTTACTTGAAGAAGGACCTGGAGGTTCTCTCATTTGGTGATCAGACAGTTATAGGTGAGTGGGGAATCAATTTGAGTGGTGGCTAG 585 0.4308 MSLNQGRSYLHLQHSEYFNNPSTVFLTSMIAQTKVSLDRITSFLHLDDLQSDVIERLPKGSFGIAIEIEDENFSWDLSSPNPTLKDINLRVCRGMRVAVCGTVGSGKSSLLSCMMGEVPKISGILKLCGTKAYVAQSPWIQSGKMAENILFGKEMDRERYERVLDACYLKKDLEVLSFGDQTVIGEWGINLSGG* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0779 194 Gene3D - 55 194 IPR027417 -
Vvi10g0779 194 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 26 194 - -
Vvi10g0779 194 Pfam ABC transporter 84 143 IPR003439 GO:0005524
Vvi10g0779 194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 194 IPR027417 -
Vvi10g0779 194 FunFam Uncharacterized protein 41 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0779 Vvi-Chr10 11936314 11936898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0779 37 194 Calmodulin-binding Proteins AT2G36910 28.736 1.18e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0779 - K05666 vvi:100254999 307.375