Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0778 ATGGACGTCCTTTTCTCTTCTATCCTCTTTGCCTCTCTTCTCTTTCTGTATATGCTGTACAAGATAGGGAAGAGATGGAGAGGCAACATCTCCTCACAAAAGCTGCCCCCAGGGCCATGGAAACTACCTCTTATTGGAAACATGCATCAACTGATTGATGGCTCACTTCCTCACCACTCCCTAAGCCGCCTGGCCAAGCAATACGGGCCTCTCATGAGCCTCCAACTTGGTGAAATTTCCACACTCATTATTTCATCACCAGAGATGGCCAAACAAATTCTGAAAACCCATGACATCAATTTTGCTCAAAGGGCTTCTTTTTTAGCTACCAACACTGTATCTTATCATTCTACCGACATTGTTTTCTCTCCATATGGCGACTATTGGAGACAACTTCGAAAAATTTGTGTAGTTGAACTTCTAACTTCCAAGCGTGTCAAATCCTTCCAATTAATTAGGGAAGAGGAGCTTTCAAATCTCATTACAACGCTCGCTTCTTGTTCAAGATTGCCCATCAATCTTACTGACAAACTTTCCTCTTGTACATTTGCCATTATAGCAAGAGCTGCTTTTGGTGAAAAATGCAAAGAACAAGATGCCTTCATATCTGTCTTGAAGGAAACGTTAGAGCTGGTTTCTGGTCCCTGTGTTGCTGATATGTATCCTTCTGTTAAATGGCTTGACCTGATTAGTGGAATGAGACATAAAATTGAGAAGGTATTTAAGAGGACTGATAGGATACTCCAAAACATTGTTGATGAGCATAGAGAGAAAATGAAAACAGAAGCAGGCAAGCTACAAGGGGAGGAAGATCTAGTTGATGTTCTTTTGAAACTTCAACAGCATGGTGATCTCGAATTTCCCTTAACTGACAACAACATCAAAGCAGTCATACTGGACATTTTCGCTGGTGGAGGCGAGACAACATCTATTTCTGTGGAGTGGGCAATGTCCGAAATGCTGAAAAACCCAAGAGTGATGGACAAGGCACAAGCTGAGGTAAGGCGGGTGTTTGATGGAAAAGGGAATGCGGATGAGGAATTAAAATTCTTAAAAGTAGTAGTGAAAGAAACCTTAAGGCTACACCCTCCTTTTCCTCTACTAATTCCAAGGGAATGTAGGGAGATGTGTGAGATTAATGGATATGAGATACCCAAGAAAACTTTAATCATTGTTAATGCATGGGCCATTGGCCGGGATTCTGATCATTGGGTTGAAGCTGAGAGATTTTACCCAGAGAGATTCCTTGACAGTTCAATTGATTACAAGGGTACTGATTTTGGATATATCCCATTTGGTGCTGGAAGAAGGATGTGTCCAGGCATACTGTTTTCTTTGCCTATCATTGAACTGTCACTGGCACATTTACTCTACAATTTTGACTGGAAACTCCCAAATGGAATGAAGGCAGATGATCTAGACATGACTGAAGCATTGGGTATAGCAGTTCGCAGAAAACAAGATCTGCACTTGATTCCCATTCCTTATAATCCATCGCATGTTCAGTAA 1509 0.4148 MDVLFSSILFASLLFLYMLYKIGKRWRGNISSQKLPPGPWKLPLIGNMHQLIDGSLPHHSLSRLAKQYGPLMSLQLGEISTLIISSPEMAKQILKTHDINFAQRASFLATNTVSYHSTDIVFSPYGDYWRQLRKICVVELLTSKRVKSFQLIREEELSNLITTLASCSRLPINLTDKLSSCTFAIIARAAFGEKCKEQDAFISVLKETLELVSGPCVADMYPSVKWLDLISGMRHKIEKVFKRTDRILQNIVDEHREKMKTEAGKLQGEEDLVDVLLKLQQHGDLEFPLTDNNIKAVILDIFAGGGETTSISVEWAMSEMLKNPRVMDKAQAEVRRVFDGKGNADEELKFLKVVVKETLRLHPPFPLLIPRECREMCEINGYEIPKKTLIIVNAWAIGRDSDHWVEAERFYPERFLDSSIDYKGTDFGYIPFGAGRRMCPGILFSLPIIELSLAHLLYNFDWKLPNGMKADDLDMTEALGIAVRRKQDLHLIPIPYNPSHVQ* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0778 502 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi10g0778 502 PRINTS E-class P450 group I signature 393 417 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi10g0778 502 PRINTS E-class P450 group I signature 429 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi10g0778 502 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi10g0778 502 PRINTS E-class P450 group I signature 352 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi10g0778 502 PRINTS E-class P450 group I signature 439 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi10g0778 502 PRINTS E-class P450 group I signature 89 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi10g0778 502 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi10g0778 502 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi10g0778 502 PANTHER OS08G0105600 PROTEIN 59 498 - -
Vvi10g0778 502 FunFam Cytochrome P450 71D8 29 493 - -
Vvi10g0778 502 Gene3D Cytochrome P450 29 492 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi10g0778 502 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 432 441 IPR017972 GO:0005506|GO:0016705
Vvi10g0778 502 CDD CYP71-like 67 489 - -
Vvi10g0778 502 PRINTS P450 superfamily signature 353 364 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi10g0778 502 PRINTS P450 superfamily signature 430 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi10g0778 502 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi10g0778 502 Pfam Cytochrome P450 36 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi10g0778 502 SUPERFAMILY Cytochrome P450 36 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0778 Vvi-Chr10 11930376 11932176 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0778 33 496 Cytochrome P450 AT3G26330 43.187 8.51e-142 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0778 - - vvi:100254557 1001.5