Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0763 ATGCAGAGCCATCTCATGTGTAATGGGTGTAGGAGCATTCTTGTTTATCCCAGAGGAGCTACAAATGTCTGTTGCGCATTATGCAATTCAGTTACCTCAGTCCCACCTCCTGGGTTGGAAATGGCTCAACTTATATGTGGAGGATGTCGGACCTTGCTAATGTACACTCGTGGTGCAACAAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGCACCAGCGCCATCCAACCAGGTTGCCCATGTCAACTGCGGGAACTGCCGAACAACACTTATGTATCCATATGGAGCTCCATCAGTCAAATGTGCAGTTTGCCACTATGTTACAAGTGTTGGTATGGTTAATGTTAGGGTTCCAATTCCTGTGCACAGACCTAATGCTGCAGCAATCTCTGCATCAACACCCTCTACTTCATCAAGCCAAACTGTGGTCGTCAAGAACCCTATGTCTGTTGATGAAAGTGGCAAATTGGTTAGCAATGTTGTTGTTGGAGTCACCACAGAGAAAAAATGA 516 0.4632 MQSHLMCNGCRSILVYPRGATNVCCALCNSVTSVPPPGLEMAQLICGGCRTLLMYTRGATSVRCSCCHTVNLAPAPSNQVAHVNCGNCRTTLMYPYGAPSVKCAVCHYVTSVGMVNVRVPIPVHRPNAAAISASTPSTSSSQTVVVKNPMSVDESGKLVSNVVVGVTTEKK* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0763 171 PANTHER PROTEIN LSD1 2 170 IPR040319 -
Vvi10g0763 171 NCBIfam zinc finger domain, LSD1 subclass 82 112 IPR005735 -
Vvi10g0763 171 NCBIfam zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Vvi10g0763 171 NCBIfam zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Vvi10g0763 171 SUPERFAMILY Multiheme cytochromes 20 108 IPR036280 -
Vvi10g0763 171 Pfam LSD1 zinc finger 46 70 IPR005735 -
Vvi10g0763 171 Pfam LSD1 zinc finger 85 109 IPR005735 -
Vvi10g0763 171 Pfam LSD1 zinc finger 7 31 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vvi10g0763 zf-LSD1 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0763 - K12191 vvi:100242577 338.961