Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0761 ATGGAACAGTCCTCATTGGAACCAGAATTTCAGATCAAAGAGGATCATTCATCAAAGCATGCCTTGAAAAATGACAGCAATATTGAGTACTCAGGCAGTCCTCAAAATCAAAAGATATCAGCCAGATGGAACCCAACTGAAGCATGTAGGCCACTCATCGAAGAAGCTCCTGTTTTCTATCCAACTGTTGAGGAGTTTCAAGATACACTAAATTATATAGCAAGCATTCGCCCAAAAGCAGAGCCATATGGTATATGTAGGATTGTGCCACCACCTTCCTGGGTTCCACCCTGCCCTCTCAGGGAGGAGAGCATTTGGAAACATTTAAAGTTTCCTACAAGAATGCAGCAAGTGGACTTACTTCAAAATAGGGAACCCATGAGAAAGAAAAACAGAGGCCGGAAGCGAAAACGAAGAAGGTATTCAAGGATGGGAACAACAAGGAGGCATTCCAGATCTGAAGTTTCTGAAGCAAACATTGTCTCTGACAGCGATGAGAAGTTTGGGTTCCATTCAGGATCAGACTTCACATTAGAAGAGTTTCAGAAACACGCTGATAGTTTCAAAGAATTTTATTTTGGAATAAAGGATGCTAAGGATAACTTGAATTCTGATGGTGTGGAATGCAACAAAAGGTGGGAACCTTCTGTAGAAGATATTGAGGGAGAATACTGGCGGATAGTGGAGAAACCAACAGATGAGGTTGAGGTATACTATGGAGCTGATCTTGAAACTGAAGCATTTGTGAGTGGTTTTCCTAAGGCATCATCCTTGATTTCTGAAAATGATTCAGATCAGTATGTGGCTTCAGGATGGAATTTAAATAACTTCCCCCGACTGCCTGGTTCTGTACTTTGTTTTGAACAAAATGATATCTCAGGAGTTCTGGTCCCATGGCTCTATGTCGGGATGTGCTTCTCATCATTTTGTTGGCATGTTGAGGACCACCACCTATACTCACTAAATTATCTACACTGGGGTGATTCAAAAGTATGGTATGGAGTACCAGGAAGTCATGCTTCAGCATTGGAGAATGCAATGAGAAAACATCTACCTGATTTGTTTGAAGAACAACCATATTTACTGAATGAACTGGTTACTCAGTTATCTCCTTCAGTTCTAAAATCTGAAAATGTACCAGTATATCGAGCTATTCAGAATTCTGGGGAGTTTATTCTTACCTTTCCAAGAGCATACCATTCAGGGTTTAATTGTGGCTTCAATTGTGCTGAAGCTGTGAATGTGGCCCCTGTTGATTGGCTGTCACATGGGCAAAGCGCAGTGGAGCTCTACAGTGAGCAGTGTCGCAAGACATCAATTTCCCATGACAAACTGCTGTTAGCATCAGCTCAAAAAGCTGTCCAGGCACTTAGGGATCCGTCAGTTCTTGGAAAGGAAGATCAAGTAAATTTAAGCTGGAAAAGTGTCTGTGGGAAGGATGGGACACTTACGAAGGCAGTTAAGACGAGAGTACAGATGGAAGAGGAAAGACTAGATCGTCTTCCAATTGGTTGGCGGCTTCAGAAGATGGAAAGAGACTTTGATTTGAAAAATGAGAGAGAATGTTTTTCATGCTTCTATGACCTACACTTATCTGCTGCAAGTTGTGAGTGCTCTCCTGACCAATTTGCATGCCTTAAACATGCTAGCCTTATTTGTTCATGTGAACCAAATCGTAAGTTTGTCCTTCTGCGTTACACCATGGATGATTTGAAGACCCTGGTTGAATCATTGGAAGGGGGATTAGATGCTATTGAAGTATGGGCATCAGAAGACCTTGGATTGGTTTCTGCTGATAAGGATGCTTGTGGCGCTATGCTGGATCAGGAGAGAGAGATATCTGGACCCATTGGTTGTGACCAAAAGGAAAGTCCACCTTGTTCCTCTAGAACACAAGAAAACTTAGACATAAATGAGCCTTGCAGTTCAAGTTATCATGTTTCTTCAGAAGTAGTTCAGTCAGAAAACCAGCAAGGAACATTTGGTTTTTGTGTATCCCATATCAGGACAGACAGGCATAATGACAACTTAAACAAAGAAGGTCTAACTAAGGGCTATGAAAGTAAGGTGGGGCAGGGGTTCTGTATTGATTTGAATCTTGATACCATGTCTGATGAACATGTAAGTGGGTTGCAGCAAGTATCTTATAGCTGTGATAGTAAAGCAACTGGAAATGTGGCTGAGACTTTTTTGTCAGTCTGCAAGGAAGAAAAGGTTAATTGTGCGGATGTTCCAAAGCAACCAGATATAGTACGACTTGGTGGTGATTGTGATTCATCAGTTTCATATGTTCTTCCAAACAAACATCACTTTCCCTATCCAGTAGATAATGGAAATCCTTGTATATCTGATGGTAGTAAGTTGTTTGGGGCTGATATATTGGTTTCACTTCCACATTCAAGTACTCTGCCAAGCAGCTTGCCAAAAACTGAAATTTTAGGCAGCTCAGATGTGAAGGCATGTGCGACTGATCAAACCTGTCTCATACCAAAGATGAATTTTTGTGTTGAGCCTATGCATTTTGGTACTGTATTGTTTGGAAAGCCATGGTGCAGTAAGCAGGCCATATTCCCTAAAGGATTTACAAGCCGTGTTAAATTCTTTAGTGTATGTGATCCAACACAAATGTGTTACTATATTTCAGAGGTGCTGGATGCAGGGCTCCTTGGGCCTCTATTTAAGGTTACTTCAGAGGGGTGCCCAAGTGAGACCTTTGCAAATGTCTCGCCAGAAAAATGCTGGGAAATGGTGCTGCAGAAACTGCAGCAAGAAATCATAAGACACAGCAGTTTAGGGAAACAACTGCTGCCCTCTTTGGAATGTTTGCAGGGTGTTAATGGCCTTGAGATGTTTGGGTTTTTATCACCACCCATCATTCAGGTTATTGAGGCTCTTGATCCAAATCATCAATGCTTAGAATACTGGAATCAGAAGAGTAGAGTAAAAATGGAAAATGTGAATGACATGTCTGCAAGTAATTCGAGGAAGTACCCTTTTGGATTGAGTTGCTCTCCAGGGGAAACAAAGGCAAAACTCTTTGGTTTCGATTTGACAAAGCAAGACCCTGATAATTCAAGCATTGGAAGAGGTGATCACTCAGTTGGGGAAGACATAAAGACCACATTACAAGGATTTTTCAAGAAGGCAAATAGGGAAGAACTGATAATGATGTATAAGGTATTCTGCAGCGAGTACACAAGTGCAGAATGGGGAGTGGCATTCACAACGCTGACCGAGGAGATCCGGAAAACATGTAAATAA 3261 0.4161 MEQSSLEPEFQIKEDHSSKHALKNDSNIEYSGSPQNQKISARWNPTEACRPLIEEAPVFYPTVEEFQDTLNYIASIRPKAEPYGICRIVPPPSWVPPCPLREESIWKHLKFPTRMQQVDLLQNREPMRKKNRGRKRKRRRYSRMGTTRRHSRSEVSEANIVSDSDEKFGFHSGSDFTLEEFQKHADSFKEFYFGIKDAKDNLNSDGVECNKRWEPSVEDIEGEYWRIVEKPTDEVEVYYGADLETEAFVSGFPKASSLISENDSDQYVASGWNLNNFPRLPGSVLCFEQNDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDSKVWYGVPGSHASALENAMRKHLPDLFEEQPYLLNELVTQLSPSVLKSENVPVYRAIQNSGEFILTFPRAYHSGFNCGFNCAEAVNVAPVDWLSHGQSAVELYSEQCRKTSISHDKLLLASAQKAVQALRDPSVLGKEDQVNLSWKSVCGKDGTLTKAVKTRVQMEEERLDRLPIGWRLQKMERDFDLKNERECFSCFYDLHLSAASCECSPDQFACLKHASLICSCEPNRKFVLLRYTMDDLKTLVESLEGGLDAIEVWASEDLGLVSADKDACGAMLDQEREISGPIGCDQKESPPCSSRTQENLDINEPCSSSYHVSSEVVQSENQQGTFGFCVSHIRTDRHNDNLNKEGLTKGYESKVGQGFCIDLNLDTMSDEHVSGLQQVSYSCDSKATGNVAETFLSVCKEEKVNCADVPKQPDIVRLGGDCDSSVSYVLPNKHHFPYPVDNGNPCISDGSKLFGADILVSLPHSSTLPSSLPKTEILGSSDVKACATDQTCLIPKMNFCVEPMHFGTVLFGKPWCSKQAIFPKGFTSRVKFFSVCDPTQMCYYISEVLDAGLLGPLFKVTSEGCPSETFANVSPEKCWEMVLQKLQQEIIRHSSLGKQLLPSLECLQGVNGLEMFGFLSPPIIQVIEALDPNHQCLEYWNQKSRVKMENVNDMSASNSRKYPFGLSCSPGETKAKLFGFDLTKQDPDNSSIGRGDHSVGEDIKTTLQGFFKKANREELIMMYKVFCSEYTSAEWGVAFTTLTEEIRKTCK* 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0761 1086 Pfam F/Y rich C-terminus 890 978 IPR003889 GO:0005634
Vvi10g0761 1086 PANTHER LYSINE-SPECIFIC DEMETHYLASE 52 868 - -
Vvi10g0761 1086 Pfam jmjN domain 57 90 IPR003349 -
Vvi10g0761 1086 Pfam F/Y-rich N-terminus 841 883 IPR003888 GO:0005634
Vvi10g0761 1086 Gene3D - 836 972 - -
Vvi10g0761 1086 MobiDBLite consensus disorder prediction 123 158 - -
Vvi10g0761 1086 SMART fyrc_3 892 984 IPR003889 GO:0005634
Vvi10g0761 1086 MobiDBLite consensus disorder prediction 1 41 - -
Vvi10g0761 1086 SMART cupin_9 266 432 IPR003347 -
Vvi10g0761 1086 MobiDBLite consensus disorder prediction 128 146 - -
Vvi10g0761 1086 Gene3D Cupin 41 416 - -
Vvi10g0761 1086 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Vvi10g0761 1086 SUPERFAMILY Clavaminate synthase-like 267 453 - -
Vvi10g0761 1086 Pfam C5HC2 zinc finger 522 574 IPR004198 -
Vvi10g0761 1086 ProSiteProfiles FYR domain FYRC motif profile. 888 978 IPR003889 GO:0005634
Vvi10g0761 1086 ProSiteProfiles FYR domain FYRN motif profile. 828 886 IPR003888 GO:0005634
Vvi10g0761 1086 MobiDBLite consensus disorder prediction 7 23 - -
Vvi10g0761 1086 Pfam JmjC domain, hydroxylase 299 415 IPR003347 -
Vvi10g0761 1086 ProSiteProfiles JmjC domain profile. 266 432 IPR003347 -
Vvi10g0761 1086 SMART fyrn_3 842 886 IPR003888 GO:0005634
Vvi10g0761 1086 MobiDBLite consensus disorder prediction 24 41 - -
Vvi10g0761 1086 SMART JmjN_1 55 96 IPR003349 -
Vvi10g0761 1086 FunFam Putative lysine-specific demethylase JMJ16 834 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0761 Vvi-Chr10 11528429 11537946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0761 1 613 JUMONJI Transcription Factor Family AT1G30810 61.897 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vvi10g0761 JmjC 2.9e-44 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0761 - - vvi:100252938 2193.31