Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0745 ATGGCTTTGAGTTTCTGCACCAACTGGGGAACAGCTGATCAGTATCTTGTCCCGGAGATGAGCAGCTTCCCAACGACACATTCAGAGCTCTCCAAGGACCTCTTCACTTTCCAGGAAAATTTCGGATTTTCAGACACTTTGGCAGATCAGTTCTTCTTCGACCCAGATCAGTACTCGTACTCAGACGACTCCACTCACCATCTCCTCCCATACTTCTCTTACCCATCAGACCATCTCATCTCCCTCTCCCCTGAAGTCTTTCCGCTCCAAGAGTTCGAGTCCTACCTCTTCCCGAAACGCCAAAAGGCCTATGAAGATCAACACTACATGGATTTTCCACCTGGGTACTTCCCCCATCCTCCAGAGTTGATGCCACAACTTCAAGTTCCACTGCCTGAGTTCCAGACTGCACCAGCATTTTATGGTTGTGGAAGTGTGGAGAGCAGTGGGAAGAAAGGCTGTAGAGAGAGCTTGTCGGCGCAGAGCATTGCGGCTCGGCAGAGGAGGAGGAAGATCACTGAGAAAACTCAAGAGCTTGGGAAGCTTATTCCTGGTGGCAACAAGATGAACACAGCTGAGATGTTCCAAGCTGCTTTCAAGTATGTCAAATACTTACAGGCTCAAGTTGCTATTCTTCAACTTATGGGTTCACTTCAGGTCAATTCTGAAGCATTCTATGTAGAAGAACTCCAAGCAACTGCATCTCCAATGATTCAAGAGAAGCTTTACTCTGTGGAGAAATGTTTGGTTTCAAAGCAATTTGTGGAAGCCCTAGCCAATGATGAACTGCTGCTCCAATCAAACTCTTCAATCTTCAATGGCATCCATCAGTTGATCCAACCCAATGACTGA 852 0.4707 MALSFCTNWGTADQYLVPEMSSFPTTHSELSKDLFTFQENFGFSDTLADQFFFDPDQYSYSDDSTHHLLPYFSYPSDHLISLSPEVFPLQEFESYLFPKRQKAYEDQHYMDFPPGYFPHPPELMPQLQVPLPEFQTAPAFYGCGSVESSGKKGCRESLSAQSIAARQRRRKITEKTQELGKLIPGGNKMNTAEMFQAAFKYVKYLQAQVAILQLMGSLQVNSEAFYVEELQATASPMIQEKLYSVEKCLVSKQFVEALANDELLLQSNSSIFNGIHQLIQPND* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0745 283 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 139 251 IPR045843 GO:0003700|GO:0006355
Vvi10g0745 283 CDD bHLH_AtbHLH_like 161 213 IPR045239 -
Vvi10g0745 283 SMART finulus 162 211 IPR011598 GO:0046983
Vvi10g0745 283 Pfam Helix-loop-helix DNA-binding domain 162 206 IPR011598 GO:0046983
Vvi10g0745 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 213 IPR036638 GO:0046983
Vvi10g0745 283 Gene3D - 158 217 IPR036638 GO:0046983
Vvi10g0745 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0745 Vvi-Chr10 11031132 11032073 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0745 90 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 42.365 1.75e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi10g0745 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0745 - - vvi:100240953 568.54