Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0743 ATGCCTTCTTCCATTTCCATTTCTTCTTCAACCTTCGTTCTCCTCTTCTTCTCCTTCTCCCTGGTTTCAATCTTACCTCCCCTAATCCTCTCTGCTTCTGTTGTTGAAGATCTCAATAACTTACACCCACCTTCAGACTTCAACTCAACCATCAACAACAACTGTCTCAACAACCCTTCTCTCAGGTACTGCAATTCTTCCTCTCCTTTGGACCTCATTGAGATCTTCAAGTCCACCATTGTTGCCAGCCACCTCTGCAACGAGTCCAGGAATCCCAACTGCGTAGAAACCTTCCCTAAAATAGACCTTCACAGCCGTCCAAAGATCGCCCCGCTTTACTTATCCTTCACCTTCTTCTGGAAGTACTGTCCTTTAACCATTCTGTCTATCAATCTCTCCAACAATTCCATCAAAGGCGGTTTCCCATCTGATGTTCTCCAATGTTCCCAAATCCAAGCTCTTGATTTGAGCCACAATGACCTCTCCGGGGATGTCCCCATACAAGGCTTCTCTCCCCTTACCAATCTCACTCTTCTTAATTTATCATACAATCACTTTTCAGAGAGTAGGATCTCTGATTCCCAGTTCTTCAAACGTTTTAATTCTTCGAGTTTTCTTCGTTCAGGCCTTGTCCCGGATCACCAGGGATTCACGATCAAGGTGGTGGTGTTCTTGTTTGGTTTTCCTATGTTTGTGATTCTGATGGTGGGCTGCTTGGGGTGGATGTGCATCCGGCGTCCAGATTTTCTACCAGCAGTTCTCCGAGGAGGAAAACACAAGTTCACACCAGCAATGCTGGAGGCAGCAACGGGTGGTTTCTCGAGAAACAATTTGGTGGGGAAGAGTGAGGGGGTTGACATTTATAGAGGAAGTGTGAGAGACAGCAGTCAAGTGAGGATTGAGATATACAGGGACGAGATCTCAGGTGAAGGCCGCAGGAGGTTTGCAGAAGAGTGTAAGGTTCTGGTTCAGTTATGCCACAAGAACATAGTTCAAGTAGTGGGGTGGTGTGACAACAGGAGATTAAGGGCCATTGTCACTGAATGGACCGAGGGAGAGAATGTTGAAATATGGGTAGCAAGGTCAGCCCCACCATGGAAGCAGAGGCTGAAGATTTTGATGGGGGTTTTGGAAGCTATGCGTTATCTGCAGGAACAATGGCCTCAAGTTGGGTATGATCTCAGGACATGTAGCATATTGCTGTCGAAGAATCGACAGCCATTGATTTCAAGGTTTAGGATTGGAGATCAAATCAGCAACACAAGAAAGATTTACAAGTTTGGGACGTTGGTGTTGGAGATGGTAACAAACAAGAGGCCGCGAGAAGAGTTTGAGCGGGGTGAAGCGGAATTTATAGAATGGATTAGAATGCATCATCCTGGAAAGGTGCACAAGGTGATAGATGAAAGAATGAAAAAGACAGGCAATACAGTTGATCAGGCTACTCAGGGAATAGGCATAGGATTAATGTGCGCAGACCTCTCAAGGGGATGGCACCCGAGCTTCGATCTGATCTACAGAATGATGTGTAAACTCTCTGATTCATGTCAAGTTCCAGCATCTCCTGACCATAAGAGATCTCATGGAGACAGAGGTGAAGGACATAGGCGCAATCAATCAAGATGA 1626 0.4594 MPSSISISSSTFVLLFFSFSLVSILPPLILSASVVEDLNNLHPPSDFNSTINNNCLNNPSLRYCNSSSPLDLIEIFKSTIVASHLCNESRNPNCVETFPKIDLHSRPKIAPLYLSFTFFWKYCPLTILSINLSNNSIKGGFPSDVLQCSQIQALDLSHNDLSGDVPIQGFSPLTNLTLLNLSYNHFSESRISDSQFFKRFNSSSFLRSGLVPDHQGFTIKVVVFLFGFPMFVILMVGCLGWMCIRRPDFLPAVLRGGKHKFTPAMLEAATGGFSRNNLVGKSEGVDIYRGSVRDSSQVRIEIYRDEISGEGRRRFAEECKVLVQLCHKNIVQVVGWCDNRRLRAIVTEWTEGENVEIWVARSAPPWKQRLKILMGVLEAMRYLQEQWPQVGYDLRTCSILLSKNRQPLISRFRIGDQISNTRKIYKFGTLVLEMVTNKRPREEFERGEAEFIEWIRMHHPGKVHKVIDERMKKTGNTVDQATQGIGIGLMCADLSRGWHPSFDLIYRMMCKLSDSCQVPASPDHKRSHGDRGEGHRRNQSR* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0743 541 MobiDBLite consensus disorder prediction 517 541 - -
Vvi10g0743 541 MobiDBLite consensus disorder prediction 521 541 - -
Vvi10g0743 541 Gene3D Transferase(Phosphotransferase) domain 1 419 513 - -
Vvi10g0743 541 ProSiteProfiles Protein kinase domain profile. 273 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0743 541 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 417 525 - -
Vvi10g0743 541 Gene3D Ribonuclease Inhibitor 71 200 IPR032675 -
Vvi10g0743 541 Pfam Protein tyrosine and serine/threonine kinase 279 425 IPR001245 GO:0004672|GO:0006468
Vvi10g0743 541 SUPERFAMILY L domain-like 102 189 - -
Vvi10g0743 541 Gene3D Transferase(Phosphotransferase) domain 1 257 418 - -
Vvi10g0743 541 SUPERFAMILY Protein kinase-like (PK-like) 258 468 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0743 Vvi-Chr10 10949389 10951106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0743 122 502 Receptor kinase-like Gene Family AT1G51890 24.091 2.61e-29 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vvi10g0743 PK_Tyr_Ser-Thr 2.2e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0743 - - vvi:100261090 1041.95