Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0728 ATGCCTAACTACAAGCACCAGGAACATCTTGTGATGGATGATATACAGAGGGTGGAGAGTTGGGACTTCATCCCAATCAGATTGCTGAGATACGAGACAGCTCAATACTACTTTCCATTAACGCCTGGTGATACTATGGGCATGATTATTAAAGAAGATCATATATTTATAATGGAGCAAATATTCAAGATAAGGCACGACGGGCTAATATCATATCCTGCCGCTGATTCATTCTTTTCTCCCGTTCTCAGAAACTATGGAGTCTCACCCGACGACCAGGTACGTATCATACGACAAGTCTCCGCCTTGGCTCGCTCCATGAAACCGCCTATTGTGAGATCAATTTCTGTGTTCATCATGGATGTGATTGTAGTTGACATTAGTGAAAGCCGAGAGCTCTGGGAAATTTTGGATTTATATGGGGAGGAAGACCATGGGGATATTGATATGGAGATGGAAGAGGATCAAATGATCAAGACCGTGCCGGCGACTAAATCATCCATTGATAAGTTGGAGAGGGTTGGACTTGATCTTTCACAAGACTGTTCCATTTGTTTGGAAAGCCTGCCAATCGGTTTGCAAGTTGTCCGGATGCCTTGCTCTCATGTTTTTCATGGTGATTGCATTGTTAAATGGTTAGAGAGGAGTTGCCACTGTCCTGTGTGTCGCTTCCAGATGCCATGTGTTGATTGA 693 0.4372 MPNYKHQEHLVMDDIQRVESWDFIPIRLLRYETAQYYFPLTPGDTMGMIIKEDHIFIMEQIFKIRHDGLISYPAADSFFSPVLRNYGVSPDDQVRIIRQVSALARSMKPPIVRSISVFIMDVIVVDISESRELWEILDLYGEEDHGDIDMEMEEDQMIKTVPATKSSIDKLERVGLDLSQDCSICLESLPIGLQVVRMPCSHVFHGDCIVKWLERSCHCPVCRFQMPCVD* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0728 230 ProSiteProfiles Zinc finger RING-type profile. 182 223 IPR001841 -
Vvi10g0728 230 SUPERFAMILY RING/U-box 181 227 - -
Vvi10g0728 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 134 227 - -
Vvi10g0728 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 229 IPR013083 -
Vvi10g0728 230 Pfam Ring finger domain 181 223 IPR001841 -
Vvi10g0728 230 CDD RING-H2_PA-TM-RING 181 223 - -
Vvi10g0728 230 SMART ring_2 182 222 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0728 Vvi-Chr10 10638208 10638900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0728 152 230 C3H Transcription Factor Family AT1G18760 36.145 3.60e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0728 - - vri:117923067 453.751