Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0708 ATGCCAAATGGAGACTTGTCTAATTCCTTATACAGGGTTACGAATTTGGAAGACGACAATCTACAATCTCTTGATTGGATTACCAGATTGAAAATTGCAATAGAAGCTGTAGAAGGTCTATCTTATCTCCATCATGAGTGTTCCCCACCCCTTGTCCACAGAGATGTTCAAGCAAGTAGTATCCTACTTGATGATAAATTTGAAGTGCGACTTGGAAGCTTAAGTGAGGTTTGTGCTCAAGAAGGGGACTCTCACCAAAATGTAATCACAAAGTTGTTAAGGAAGCCACAGTAA 294 0.398 MPNGDLSNSLYRVTNLEDDNLQSLDWITRLKIAIEAVEGLSYLHHECSPPLVHRDVQASSILLDDKFEVRLGSLSEVCAQEGDSHQNVITKLLRKPQ* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0708 97 ProSiteProfiles Protein kinase domain profile. 1 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0708 97 SUPERFAMILY Protein kinase-like (PK-like) 1 72 IPR011009 -
Vvi10g0708 97 PANTHER RECEPTOR-LIKE PROTEIN 55 1 81 - -
Vvi10g0708 97 Gene3D Transferase(Phosphotransferase) domain 1 1 96 - -
Vvi10g0708 97 FunFam - 1 96 - -
Vvi10g0708 97 Pfam Protein tyrosine and serine/threonine kinase 1 72 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0708 Vvi-Chr10 10197081 10200883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0708 1 97 Miscellaneous Gene Families AT2G16250 74.227 1.02e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Vvi10g0708 PK_Tyr_Ser-Thr 3.4e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0708 - - vvi:100259194 192.971