Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0680 ATGGAAGACTACATTGTTGCAGAGAAGAGGCAAATCAACGGCAATGAGTTGGGGTTATATGCAATTTTTGATGGGCACTCTGGTAAACAAGTTGCAGAATACTTGCACAGCCATCTATTTGATAACATATTACAGAAGCCTGATTTCTGGACCAACCCAAAACGACAGAGGTGGATTTGTGTCCAAACTTTCAGGAGTGTTCCCCGGGTGGACGGGCAGTTAGCTATGGCTAGAGCAATCGGAGATGAGAAGCTAAAGGAGCACATAACTTCAGAACCAGATGTAGCAATTGTGATGATGGACACTGATGTCAAATTCATAATCTTGGCAGATGATGGCCTGTGGAACGTAATGTCAAACCAAGAAGCGGCTGATTGCATTAGAGAGTTGAGGGATGGTCAAGAAACGTATGAGGAGTTGATTAAGGAGGCCTTGTCTAGGGGAAGCCATGAAGATATCTCATGCGTTGTGGTCGCCTTCCATTGA 486 0.4465 MEDYIVAEKRQINGNELGLYAIFDGHSGKQVAEYLHSHLFDNILQKPDFWTNPKRQRWICVQTFRSVPRVDGQLAMARAIGDEKLKEHITSEPDVAIVMMDTDVKFIILADDGLWNVMSNQEAADCIRELRDGQETYEELIKEALSRGSHEDISCVVVAFH* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0680 161 Pfam Protein phosphatase 2C 66 152 IPR001932 -
Vvi10g0680 161 CDD PP2Cc 1 160 IPR001932 -
Vvi10g0680 161 Gene3D - 60 161 IPR036457 -
Vvi10g0680 161 FunFam Putative protein phosphatase 2C-like protein 44 60 161 - -
Vvi10g0680 161 Gene3D - 1 59 IPR036457 -
Vvi10g0680 161 SUPERFAMILY PP2C-like 1 161 IPR036457 -
Vvi10g0680 161 ProSiteProfiles PPM-type phosphatase domain profile. 1 160 IPR001932 -
Vvi10g0680 161 PANTHER PROTEIN PHOSPHATASE 64 159 IPR015655 GO:0004722|GO:0006470
Vvi10g0680 161 SMART PP2C_4 6 158 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0680 Vvi-Chr10 9745036 9746882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0680 1 52 PP2C-type Phosphatase Gene Family AT4G28400 61.538 3.37e-18 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0680 - - dcr:108223653 172.94