Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0677 ATGGCGAGGAAAACCATTCGTCTCCAAGTGATAGCAGTTCATCTCGTCATCATCATTATCATCTTCCTGTTTCCACAAAAGGGTTCAGCAGAATCTATGGTCAAGTCTGGTTGCCAAGACACATGTGGGAACATCACTATTCCTTACCCATTTGGCATCGGTAGTCGCTGTTATCTCGACCCACGGTTTGAGATCACTTGTGATGTGTCCCGCAATCCCCATTATCCTCTTCTACTTAATGATATCGTGGTTTCCTATATTTCCCTGGACTACGTCCTCATCAATCATAGCATTTCCAGATTTTGTTATACTAATAATACCGACAAAAGTCTTAGTATGAATTCGTCAGTCTTCCCTTTCAGCTTTTCCCACACTCAGAATAAGTTTGTGGCCATAGGTTCTGGCGTATTTGCTTTTATCACCCAATCTCCAAGTAAAAACTACTCAACTGGATGTGCCTCACTTGAGGGCGAAACTCTCAGATACTGCAGTCCTAAGAGCGGATGCTCTGGTCCTGGGTCTGGCAAAAATTTTCCTCTCTCCAGTACAGAATATTCTGGTATAGCACAGGACAGTTTACCTGCCAAAGGATATCCTGGTAATCCTAATAATCCTTATCAAGATAATCTGCCTTATCGTCGTGGACCTTACACTGAGATCATATCTGAGTCGTCATCGATATGCTATGGCATTTATTGCTGTGAGACTGCTTTTCCTAAGGACCTTACCTCGTTTAATATGCAGCTCAATACTATGCAAACTACGGGATTCAAAAGTGAGACAGAGGACATATGTGGCTATGCATTCATTGCCCAAACCAACTTTCCTGTTTCCTACACAATTTCATCCTCCCGTAAAATTGTCCCAGTCTCGGAGGTCGTCCCAGCTGTGCTTGAATGGACAGTAGGAAATATCTCTTGCCATGAAGCAAAGGGACGAGAAGACTATGCATGTGGCTACAATAGTTCTTGCGTCGACTCAACCCAAGGCTCGGGATATAAGTGTAAATGCCTCATAGGCTACAGGGGGAATCCCTACCTCCCAACTGGCTGCGAAGATGTTGATGAGTGCAAAGAGCCCAAGAACAACATTTGCCACGAGATTGCCCGTTGCGTTAACATTCCTGGCAATTACTCGTGCATTTGCCCAGACGGCTACCATGGAGATGCCACAAAATTCGGAAGTGGCTGCATTCCTGTCAAAGGAAAACTCCCTGTGCCTTTGGTCGTTTCTTTAGGCATCGGAATTGCTGTTGGTCTTCTAATCTTGCTTGCTATTGCCTTTTGGTTGTATAAACGACTTGAAAAAAGAAAGAAAGACATTCTCAAACGGAAGTTCTTTGATGAGAATGGTGGTCGGCTGTTGCGACATATGATGGCCTTAAGCAAAGGAAGTGTTGAGAAAATGAAGCTCTATATTATAGAAGAATTGGAGAAGGCAACCGACAATTTCAATGTTAATCGAATCCTTGGAAAGGGTGGTTTCGGCACAGTATATAAAGGAATGTTACAAGATGGAAGCATTGTAGCTGTGAAGAAATCTGATAAAGTTGATGAAATGCAAGTAGATCAATTCGTCAACGAAGTTTTTATTCTTACCCAAATCGACCATAGCCACATTGTGAAGTTGTTAGGTTGCTGTCTAGAGACTGAAGTTCCTTTGCTGGTTTATGAACATGTCTCCAACGGCACCCTCTCCCACCATCTCCATGACAAGGGTCATTTATCTACATTATCTTGGGAAAACCGCTTGCGAATTGCAAGTGAAATTGCCGATGCACTTGATTATTTGCACTCATATGGCTCTGCAGCTATCTTTCACAGGGATATCAAGTCTAACAATATACTCTTGGATGAAAACCTCAGGGCTATAGTTGCTGACTTTGGAATTTCAAGGCCAGTATCCGCGAAGAAGACTCATTTAACCGCATCAGTACTGCAAGGCACGTATGGCTACTTGGATCCAGAGTACTTCCAAACATGGCAATTTACAAGTAAAAGTGATGTATATGCCTTTGGCGTGCTTCTTGCGGAACTTATTACAGGAGAAAAGGCCATTTGTGCAGACAGAGACAAACAAGGTTTAGCTTCTCATTTTACATCAGCAATGAAAAGCAATGATCTTTTTGAAATTGTGGACCATACTCTAGTGTTGAATGAAGATCAGAAGGAAGAGATTCTTGTTGTTGCTAGGATTGCTGAAAGATGCCTGGAACCGACTGGGGATAAAAGGCCAACAATGAAGGACGTAGCAGGAGGACTCCCAAAATTGAGAAAGATATTCCTGGAGCAGCAGGTAGTTGAATAA 2307 0.4283 MARKTIRLQVIAVHLVIIIIIFLFPQKGSAESMVKSGCQDTCGNITIPYPFGIGSRCYLDPRFEITCDVSRNPHYPLLLNDIVVSYISLDYVLINHSISRFCYTNNTDKSLSMNSSVFPFSFSHTQNKFVAIGSGVFAFITQSPSKNYSTGCASLEGETLRYCSPKSGCSGPGSGKNFPLSSTEYSGIAQDSLPAKGYPGNPNNPYQDNLPYRRGPYTEIISESSSICYGIYCCETAFPKDLTSFNMQLNTMQTTGFKSETEDICGYAFIAQTNFPVSYTISSSRKIVPVSEVVPAVLEWTVGNISCHEAKGREDYACGYNSSCVDSTQGSGYKCKCLIGYRGNPYLPTGCEDVDECKEPKNNICHEIARCVNIPGNYSCICPDGYHGDATKFGSGCIPVKGKLPVPLVVSLGIGIAVGLLILLAIAFWLYKRLEKRKKDILKRKFFDENGGRLLRHMMALSKGSVEKMKLYIIEELEKATDNFNVNRILGKGGFGTVYKGMLQDGSIVAVKKSDKVDEMQVDQFVNEVFILTQIDHSHIVKLLGCCLETEVPLLVYEHVSNGTLSHHLHDKGHLSTLSWENRLRIASEIADALDYLHSYGSAAIFHRDIKSNNILLDENLRAIVADFGISRPVSAKKTHLTASVLQGTYGYLDPEYFQTWQFTSKSDVYAFGVLLAELITGEKAICADRDKQGLASHFTSAMKSNDLFEIVDHTLVLNEDQKEEILVVARIAERCLEPTGDKRPTMKDVAGGLPKLRKIFLEQQVVE* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0677 768 SMART egfca_6 353 398 IPR001881 GO:0005509
Vvi10g0677 768 ProSiteProfiles EGF-like domain profile. 353 392 IPR000742 -
Vvi10g0677 768 FunFam Wall-associated receptor kinase 2 305 351 - -
Vvi10g0677 768 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 31 758 IPR045274 GO:0007166
Vvi10g0677 768 ProSiteProfiles Protein kinase domain profile. 484 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0677 768 SUPERFAMILY EGF/Laminin 353 391 - -
Vvi10g0677 768 Gene3D Laminin 356 393 - -
Vvi10g0677 768 Pfam Wall-associated receptor kinase galacturonan-binding 38 90 IPR025287 GO:0030247
Vvi10g0677 768 FunFam Wall-associated receptor kinase 2 454 559 - -
Vvi10g0677 768 SUPERFAMILY Protein kinase-like (PK-like) 468 751 IPR011009 -
Vvi10g0677 768 ProSitePatterns Protein kinases ATP-binding region signature. 490 513 IPR017441 GO:0005524
Vvi10g0677 768 SMART serkin_6 484 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0677 768 FunFam Fibrillin 2 352 393 - -
Vvi10g0677 768 ProSitePatterns Calcium-binding EGF-like domain signature. 353 380 IPR018097 GO:0005509
Vvi10g0677 768 Gene3D Transferase(Phosphotransferase) domain 1 560 765 - -
Vvi10g0677 768 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 371 382 IPR000152 -
Vvi10g0677 768 Gene3D Phosphorylase Kinase; domain 1 453 559 - -
Vvi10g0677 768 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Vvi10g0677 768 Gene3D Laminin 306 355 - -
Vvi10g0677 768 Pfam Calcium-binding EGF domain 353 387 IPR001881 GO:0005509
Vvi10g0677 768 CDD EGF_CA 353 389 - -
Vvi10g0677 768 SMART egf_5 356 398 IPR000742 -
Vvi10g0677 768 SMART egf_5 306 352 IPR000742 -
Vvi10g0677 768 Pfam Protein kinase domain 485 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0677 768 FunFam Wall-associated receptor kinase 2 560 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0677 Vvi-Chr10 9709125 9711896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0677 225 758 Receptor kinase-like Gene Family AT1G21230 45.370 1.25e-149 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi10g0677 Pkinase 9.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0677 - - vvi:100262909 1500.72