Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0676 ATGAGGATGCTTCTGCAAGTGCTAGTATCAGTTCATCTCATCACAATCATCATCTCTTTCGTATTTATAGCACAGGAAGCAGGGGCATCTATGACCAAGCCTGGGTGCCCAGAGAAATGTGGGAATATTACCATTCCATATCCATTTGGCATGGGGAAAGGTTGTTACCTGAATAGAAATTTTGAGATCACATGCAACATGTCCTCCAATCCCCCTCGTCCTCTTCTCCTCCAAGAAGTTCAACTTTTGCAGATATCAGAAGACTATCTGCGCATCAACGATATTGTTCACCATAGCTGTTTTAATAAGCAATCAGGGAAGACGAATTCATCACATGTACCATATAACAGAACTCATCATTTCAGTTACTCACACACCCAGAATGAGTTCATAGCCATCGGGTGTGACATATTTGCTTATATCACTGAGGACAACAGTAAAACAAACGCAACTGGGTGTGCATCGCTTTGTAATACTGATGAAGACATCGCTACTGATTTTTCCTCTTCTGCTTGCTCTGGCATTGGTTGCTGCAGGACTTATCTCCAAACAGATATTTCACGGTTTTATCTGAAGATGCGTAGCATCAACATGATCACACCAATCTGGACCTCTCAACCATGTGGCCTTGCTTTCATTTCTGAGAGGAACTTCTCCATACGTCAATATTTTAACCTCTCTAGTAAATTTTTAGAGAGGAATTTGTATTTTGTTCCAGCAGTACTTGACTGGTCAGTTGGGGACGTCTCTTGCCCTGAGGCTATCAGAAGAAAAAACTATGCGTGTGGCCAGAATACGTACTGCCATAACTCCATCCAGGGCCAGGGGTATAAGTGTCACTGCTCTAAAGGCTACCAAGGGAACCCCTACCTTGCAAACGGCTGCCAAGATATTAATGAGTGCAACGACCCAGACGAAACTTTTTGCCTCAAGATAGCTCTTTGCACTAATGTCCCTGGCAGTTACTCGTGCACTTGCCCAACTGATTACCATGGAGATGGCAAGAAAGATGGAACTGGGTGCATACGTGGCAAGCATCCACATTTGCTATCATTGGTACTTTCTCTAGGTATAAAACTTTACCATTCTCCAACACCTAGCACTCGAATCCCCTTCTCTACACTAACTTTTGTGTCTGATGTAGGTGTGGGGATTACTGTTGTTCCCTTTATCCTAATTGCTACAAGCTTAAGGTTATACCGAGGACTTGAGAAAAGAGAGAAAAAGAAAATAAAACAGAAGTTCTTCAAGAAGAATGGAGGTCTGCTATTGCAACAGCAAATTTCTTCTAGCAAGGAAAGTGTAGAAAAAACAAAACTCTATTCGGTAGAAGAGTTGGAGAAAGCAACAGATGGTTTCAATTTAAGTCGAATCATTGGTAAGGGAGGCCTCGGCACAGTATACAAAGGGATGTTATCAGATGGAAGCATTGTAGCCATTAAGAAATCCAATACGGTTGATGAGAAGCAGTTAGACCAGTTCATTAATGAAGTTTTGATTCTTTCACAGATCAACCATAGGCACATAGTAAAACTATTAGGTTGTTGTCTGGAGACTGAAGTACCTTTGCTGGTTTATGAATATGTCTCTAATGGCCCCCTCTCCCACCATCTTCATGATGAGGGTCATGTATATAGAATATCTTGGAAAAATCGGCTGCGAATTGCAAGTGAAATTGCTGGAGCCCTTGCTTATTTGCACTCGCATGCTTCTACAGCCATCTGTCATAGAGATATCAAGTCTAGCAACATATTGTTGGATGAAAACCTCCGGGCTGTACTTTCTGACTTTGGACTCTCAAGGTCAATACCCCTTGACAAAACTCATTTAACTGCATTGGTACAAGGGACATTTGGTTACTTGGATCCTGATTATTTTCATTCAGGTCAATTGACTGATAAAAGTGATGTTTATGCCTTTGGTGTAGTCCTTGCTGAACTTCTGACAGGAGAAAAAGCCATTTCCTTTGATAGATTTGAACAAGGTCTAGCAAGTCATTTTAGATCAGCAATGAAACAAAATCATCTGTTTGATATTCTTGATAACCAAGTTGTAAATGAAGGACAGAAGGATGATATTTTTGCTGTTGCAAAGCTTACTAAGAGATGCCTAAAGTTGAATGGGAAAAAAAGGCCAACCATGAAACAAGTTGAAATAGACCTCCAACAACTGGGCAGATTTCAGGAGCAGTTTTCTTGTCAGAAGTCAATGATTCAAGAGGATTTTTCACAACAGCAAACATGCCAGGACGACTGCACGGTAAGTGAAAGATCCCATTCCTACACATTTGGTCCAGCTACAGAAGAAATCGTTCAAGATATTGAGGTCTTGTTTTCGTAA 2340 0.4111 MRMLLQVLVSVHLITIIISFVFIAQEAGASMTKPGCPEKCGNITIPYPFGMGKGCYLNRNFEITCNMSSNPPRPLLLQEVQLLQISEDYLRINDIVHHSCFNKQSGKTNSSHVPYNRTHHFSYSHTQNEFIAIGCDIFAYITEDNSKTNATGCASLCNTDEDIATDFSSSACSGIGCCRTYLQTDISRFYLKMRSINMITPIWTSQPCGLAFISERNFSIRQYFNLSSKFLERNLYFVPAVLDWSVGDVSCPEAIRRKNYACGQNTYCHNSIQGQGYKCHCSKGYQGNPYLANGCQDINECNDPDETFCLKIALCTNVPGSYSCTCPTDYHGDGKKDGTGCIRGKHPHLLSLVLSLGIKLYHSPTPSTRIPFSTLTFVSDVGVGITVVPFILIATSLRLYRGLEKREKKKIKQKFFKKNGGLLLQQQISSSKESVEKTKLYSVEELEKATDGFNLSRIIGKGGLGTVYKGMLSDGSIVAIKKSNTVDEKQLDQFINEVLILSQINHRHIVKLLGCCLETEVPLLVYEYVSNGPLSHHLHDEGHVYRISWKNRLRIASEIAGALAYLHSHASTAICHRDIKSSNILLDENLRAVLSDFGLSRSIPLDKTHLTALVQGTFGYLDPDYFHSGQLTDKSDVYAFGVVLAELLTGEKAISFDRFEQGLASHFRSAMKQNHLFDILDNQVVNEGQKDDIFAVAKLTKRCLKLNGKKRPTMKQVEIDLQQLGRFQEQFSCQKSMIQEDFSQQQTCQDDCTVSERSHSYTFGPATEEIVQDIEVLFS* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0676 779 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 315 326 IPR000152 -
Vvi10g0676 779 SMART serkin_6 453 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0676 779 SMART egf_5 250 296 IPR000742 -
Vvi10g0676 779 SMART egf_5 300 342 IPR000742 -
Vvi10g0676 779 Gene3D Laminin 251 299 - -
Vvi10g0676 779 Gene3D Phosphorylase Kinase; domain 1 417 528 - -
Vvi10g0676 779 Pfam Protein kinase domain 454 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0676 779 CDD EGF_CA 297 333 - -
Vvi10g0676 779 FunFam Wall-associated receptor kinase 2 423 528 - -
Vvi10g0676 779 ProSitePatterns Calcium-binding EGF-like domain signature. 297 324 IPR018097 GO:0005509
Vvi10g0676 779 Pfam Calcium-binding EGF domain 297 341 IPR001881 GO:0005509
Vvi10g0676 779 FunFam Fibrillin 2 292 337 - -
Vvi10g0676 779 FunFam Wall-associated receptor kinase 2 529 744 - -
Vvi10g0676 779 Gene3D Laminin 300 343 - -
Vvi10g0676 779 SUPERFAMILY Growth factor receptor domain 261 752 IPR009030 -
Vvi10g0676 779 SMART egfca_6 297 342 IPR001881 GO:0005509
Vvi10g0676 779 CDD STKc_IRAK 459 724 - -
Vvi10g0676 779 Gene3D Transferase(Phosphotransferase) domain 1 529 750 - -
Vvi10g0676 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 574 586 IPR008271 GO:0004672|GO:0006468
Vvi10g0676 779 ProSiteProfiles EGF-like domain profile. 297 333 IPR000742 -
Vvi10g0676 779 ProSiteProfiles Protein kinase domain profile. 453 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0676 779 Pfam Wall-associated receptor kinase galacturonan-binding 36 89 IPR025287 GO:0030247
Vvi10g0676 779 SUPERFAMILY Protein kinase-like (PK-like) 431 721 IPR011009 -
Vvi10g0676 779 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 734 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0676 Vvi-Chr10 9656452 9659202 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0676 9 724 Receptor kinase-like Gene Family AT1G21230 40.137 4.46e-176 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi10g0676 Pkinase 4.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0676 - - vvi:100245738 1496.87