Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0673 ATGAGTGCAACGACCCAGACGAAACTTTTTCATCCACATTTGCTATCATTGGTACTTTCTCTAGGTATAAAACTTTACCATTCTCCAACACCTAGCACTCGAATCCCCTTCTCTACACTAACTTTTGTGTCTGATGTAGGTGTGGGGATTACTGTTGTTCCCTTTATCCTAATTGCTACAAGCTTAAGGTTATACCGAGGACTTGAGAAAAGAGAGAAAAAGAAAATAAAACAGAAGTTCTTCAAGAAGAATGGAGGTCTGCTATTGCAACAGCAAATTTCTTCTAGCAAGGAAAGTGTAGAAAAAACAAAACTCTATTCGGTAGAAGAGTTGGAGAAAGCAACAGATGGTTTCAATTTAAGTCGAATCATTGGTAAGGGAGGCCTCGGCACAGTATACAAAGGTATGTTATCAGATGGAAGCATTGTAGCCATTAAGAAATCCAATACGGTTGATGAGAAGCAGTTAGACCAGTTCATTAATGAAGTTTTGATTCTTTCACAGATCAACCATAGGCACATAGTAAAACTATTAGGTTGTTGTCTGGAGACTGAAAAGTCAATGATTCAAGAGGATTTTTCACAACAGCAAACATGCCAGGACGACTGCACGGTAAGTGAAAGATCCCATTCCTACACATTTGGTCCAGCTACAGAAGAGATCGTTCAAGATATTGAGGTCTTACTAACTAATTTTTTTAAAGTAATAGAGTTGAAAGAGAAACACAAACATCAAGGAGAACTAAAAATTATTGTTTTTAGAACTAAAAATTATCAATTGGATCTCATGACCAATTTGCTTGGCACCCATTCTCCTCAATTTATTGCAAGATTGGGAATGAAAAGCCTAAAAGATATCTAA 861 0.3682 MSATTQTKLFHPHLLSLVLSLGIKLYHSPTPSTRIPFSTLTFVSDVGVGITVVPFILIATSLRLYRGLEKREKKKIKQKFFKKNGGLLLQQQISSSKESVEKTKLYSVEELEKATDGFNLSRIIGKGGLGTVYKGMLSDGSIVAIKKSNTVDEKQLDQFINEVLILSQINHRHIVKLLGCCLETEKSMIQEDFSQQQTCQDDCTVSERSHSYTFGPATEEIVQDIEVLLTNFFKVIELKEKHKHQGELKIIVFRTKNYQLDLMTNLLGTHSPQFIARLGMKSLKDI* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0673 286 Gene3D Phosphorylase Kinase; domain 1 78 192 - -
Vvi10g0673 286 ProSiteProfiles Protein kinase domain profile. 118 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0673 286 FunFam Wall-associated receptor kinase 2 88 193 - -
Vvi10g0673 286 Pfam Protein kinase domain 119 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0673 286 SMART tyrkin_6 118 286 IPR020635 GO:0004713|GO:0006468
Vvi10g0673 286 SUPERFAMILY Protein kinase-like (PK-like) 96 190 IPR011009 -
Vvi10g0673 286 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 54 201 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0673 Vvi-Chr10 9536363 9541327 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0673 26 193 Receptor kinase-like Gene Family AT1G17910 52.198 1.65e-51 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi10g0673 Pkinase 4.6e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0673 - - vri:117923462 308.916