Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0671 ATGCTTCTGCAATTGCTAGTATCAGTTCATCTTATCACAATCATCATCTTCTTTGTATTTATACCACAGGAAGCAGGGGCATCTCTGACCAAGCCTGGCTGCCCAGAGAAATGTGGGAACGTTACCATTCCATATCCATTTGGCATGGGAAAAGGCTGTTACCTTCATAGAGATTTTGAGATTACATGCAACATGTCCTCCAATCCGCCTCTTCCACTTCTCCAAGAAGTTCAACTTTTGCAGATATCAGAAGACAATCTGCGCATCAATGATATTGCTTATCGTAGCTGTTTTAACAACCAATCAGGGAAGACTGATTCATCATATATATTATACAATAGAACTCATCATTTCAGTTACTCCTACACTCACAATACGTTCGTAGCCATTGGGTGTGACATATTTGCTTATATCACTGGGTACAACAGTACAGCATATGCAACTGGGTGTGCATCGCTTTGTAATACTGATAATGACATCGCTGCTGGTTTTTCCTCTTCTGCTTGCTCTGGCATTGGTTGCTGCAGGACTTATCTCCAAACAGATATTGCACACTTTTATCTCCGGATTCGCAGCATCAACATGATCACACCAACCTGGTCTTCTGAGCCATGTGGCCTTGCTTTCATAGCAGAGAGGAACTTCTCTACACTTGAACATTTTAACCTCTCTAGTAAATTTGACAAGAAATTGTATTTTGTCCCAGCAGTACTTGACTGGTCAGTTGGGGAAGTCTCTTGCCATGAAGCTATCAGAAGAAAAAACTATGCATGTGGCCAGAACACTTACTGCAACAACTCCATCCAGGGTCGGGGGTATAATTGTCACTGCCTTAACGGCTACCAAGGGAATCCCTACCTTGCAAATGGCTGCCAAGGTACAGTTCTTCTACTATTCAACATTTTATATTTACTTTTTTGCCACTCCCACAAGCTTATGAATTTCTTACTAATATTCTTTTTTTCTTTTGTGCTCTCAAAAGATATTAATGAGTGCAACGACCCAAACCAAAATGTTTGCCACAAGATAGCTCTTTGCAGTAACATCCCTGGCAGTTACTCATGCAATTGCCCATCTGGTTACCATGGAGATGGCAGGAAACATGGAACTGGGTGCATACGTGGCAAGCGTAAACATTTGCTACTACTGGTATTTTCTTTAGGCGTGGGGATTATTGTTGTTCCCTTGATCCTAATTTCTACGGGCTTAAGGTTATACCGAGGAGTTGAGGAAAGAGAGAAAAAGAAAATAAAACAGGAGTTCTTCAAAAAGAACGGTGGTCTGCTATTGCAACAGCAAATTTCTTCAAGCAAAGAAAGCGTAGAAAAAACAAAACTCTATTCGGTAGAAGAGTTGGAGAGAGCAACAGATGGCTTCAATTCAGGTCGAGTCATCGGTAAGGGAGGCCTTGGCACAGTATACAAAGGGATGCTGTCAAATGGAAGCATTGTAGCCATTAAGAAGTCCAATACTGTTGATGAAAAGGAATTGGACCAGTTCGTCAATGAAGTTTTCATTCTTTCACAGATCAACCATAGGCACATAGTAAGATTGTTAGGTTGTTGTCTGGAGACTGAAGTACCTTTGCTGATTTATGAATATGTCTCCAATGGCACCCTTTTCCACCATCTTCATGATGAGGGCCACGCATCTACATTATCTTGGAAAAACCGGCTGCGAATTGGGAGTGAAATTGCCGGAGCCCTGGCTTATTTGCACTCATATGCTTCTATTGCCATCTGTCACAGGGATATCAAATCTAGTAACATATTGTTGGATGAAAACCTCCGGGCAGTAGTTTCTGACTTTGGACTTTCAAGGTCAATACCCCTTGACAAAACTCACTTAACTGCGTTGGTACAAGGGACATTTGGTTACTTGGATCCGGATTATTTTCATTCAGGTCAATTTACAGATAAAAGTGATGTGTATGCCTTCGGTGTAGTCCTTGCTGAACTTCTGACAGGAGAACAAGCCATTTCCTCGGATAGATCTGAACAAGGTCTAGCTAATCATTTTAGATCAGCAATGAAACAAAATCGCCTGTTTGAAATTCTTGATAACCAAGTTGTAAATGAAGGACAGAAGGAGGAGATTTTCGCCATTGCTAAGCTTGCTAAGAGATGCCTAAAGTTGAATGGGAAAAAAAGGCCAACCATGAAACAAGTTGATATAGACCTCCAACAACTGGGCAGATTTCAGGGGTTGTCTTTGCAGAAGACATGGATTCAAGAACCTTCCTTGCAGCAGCAAACATGCGAGGACTACTGCACGCTACATGAAACACGTGTCGGAGCAGCTGACCGTGGCCATGGCGTTAGTTGGGATGGTGACCAGCTGAGTAAGGAATAG 2352 0.4201 MLLQLLVSVHLITIIIFFVFIPQEAGASLTKPGCPEKCGNVTIPYPFGMGKGCYLHRDFEITCNMSSNPPLPLLQEVQLLQISEDNLRINDIAYRSCFNNQSGKTDSSYILYNRTHHFSYSYTHNTFVAIGCDIFAYITGYNSTAYATGCASLCNTDNDIAAGFSSSACSGIGCCRTYLQTDIAHFYLRIRSINMITPTWSSEPCGLAFIAERNFSTLEHFNLSSKFDKKLYFVPAVLDWSVGEVSCHEAIRRKNYACGQNTYCNNSIQGRGYNCHCLNGYQGNPYLANGCQGTVLLLFNILYLLFCHSHKLMNFLLIFFFSFVLSKDINECNDPNQNVCHKIALCSNIPGSYSCNCPSGYHGDGRKHGTGCIRGKRKHLLLLVFSLGVGIIVVPLILISTGLRLYRGVEEREKKKIKQEFFKKNGGLLLQQQISSSKESVEKTKLYSVEELERATDGFNSGRVIGKGGLGTVYKGMLSNGSIVAIKKSNTVDEKELDQFVNEVFILSQINHRHIVRLLGCCLETEVPLLIYEYVSNGTLFHHLHDEGHASTLSWKNRLRIGSEIAGALAYLHSYASIAICHRDIKSSNILLDENLRAVVSDFGLSRSIPLDKTHLTALVQGTFGYLDPDYFHSGQFTDKSDVYAFGVVLAELLTGEQAISSDRSEQGLANHFRSAMKQNRLFEILDNQVVNEGQKEEIFAIAKLAKRCLKLNGKKRPTMKQVDIDLQQLGRFQGLSLQKTWIQEPSLQQQTCEDYCTLHETRVGAADRGHGVSWDGDQLSKE* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0671 783 Pfam Wall-associated receptor kinase galacturonan-binding 34 90 IPR025287 GO:0030247
Vvi10g0671 783 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 346 357 IPR000152 -
Vvi10g0671 783 Pfam Calcium-binding EGF domain 328 366 IPR001881 GO:0005509
Vvi10g0671 783 Pfam Protein kinase domain 460 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0671 783 SMART serkin_6 459 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0671 783 SMART egf_5 246 292 IPR000742 -
Vvi10g0671 783 SMART egf_5 331 373 IPR000742 -
Vvi10g0671 783 SUPERFAMILY Protein kinase-like (PK-like) 437 724 IPR011009 -
Vvi10g0671 783 SMART egfca_6 328 373 IPR001881 GO:0005509
Vvi10g0671 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 580 592 IPR008271 GO:0004672|GO:0006468
Vvi10g0671 783 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 737 IPR045274 GO:0007166
Vvi10g0671 783 ProSiteProfiles EGF-like domain profile. 328 364 IPR000742 -
Vvi10g0671 783 FunFam Wall-associated receptor kinase 2 429 534 - -
Vvi10g0671 783 FunFam Wall-associated receptor kinase 2 535 752 - -
Vvi10g0671 783 Gene3D Laminin 322 368 - -
Vvi10g0671 783 CDD STKc_IRAK 465 723 - -
Vvi10g0671 783 Gene3D Transferase(Phosphotransferase) domain 1 535 742 - -
Vvi10g0671 783 Gene3D Phosphorylase Kinase; domain 1 423 534 - -
Vvi10g0671 783 ProSitePatterns Calcium-binding EGF-like domain signature. 328 355 IPR018097 GO:0005509
Vvi10g0671 783 SUPERFAMILY EGF/Laminin 328 367 - -
Vvi10g0671 783 CDD EGF_CA 328 364 - -
Vvi10g0671 783 FunFam Fibrillin 2 324 369 - -
Vvi10g0671 783 ProSiteProfiles Protein kinase domain profile. 459 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0671 Vvi-Chr10 9476332 9484862 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0671 7 730 Receptor kinase-like Gene Family AT1G21230 40.299 4.58e-179 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi10g0671 Pkinase 5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0671 - - vvi:100852951 1439.48