Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0670 ATGTTTTCAAAAGATATTAATGAGTGCGAGGACCCAAACAAAATTTTTTGCCACGAGATAGCTCTTTGCACTAACGTCCCTGGCAGTTACTCATGCACTTGTCCAACTAGTTACCATGGAGATGGAAAGAAACAAGGAACTGGGTGCATACGTGCGGGGATTTCTGTTGTTTCCTTGATCCTAATTGCTACAGGCTTAAGGTTATACCGAGGACTTAAGGAAAGAGAGAAAAAGAAAATAAAACAGAAGTTCTTCAAGAAGAATGGTGGTCTGCTATTGCAACAGCAAATTTCTTCAAGCAAAGAAAGTGTAGAAAAAACAAAACTCTATTCGGTAGAAGAGTTGGAGAGAGCAACAGATGGCTTCAATTCGAGTCGAGTCATTGGTAAGGGAGGCCTTGGCACAGTATACAAAGGAATGTTGTCGGATGGAAGCATTGTAGCCATTAAGAAATCCAATACCGTTGATGAAAAGCAATTGGACCAGTTCGTTAACGAAGTTTTCATTCTTTCACAGATCAACCATAGGCACATAGTAAGATTGCTAGGTTGTTGTCTGGAGACTGAAGTACCTTTGCTGGTTTATGAATACGTCTCCAATGGCACCCTCTTCCACCATCTCCATGATGAGGGCCATGCATCTACATTATCTTGGAAAGACCGGCTGCGAATTGGGAGTGAAATTGCCGGAGCCCTGGCATATTTGCACTCATATGCTTCTATAGCCATCTGTCACAGGGATATCAAGTCTAGGAACATATTGTTGGATGAAAACCTCCGGGCAGTAGTTTCTGACTTTGGACTTTCAAGATCAATACCCCTTGACAAAACTCACTTAACTGCATTAGTACAAGGGACATTTGGTTACTTAGATCCTGATTATTTTCATTCAGGTCAATTTACAGATAAAAGTGATGTGTATGCCTTCGGCGTAGTCCTTGCTGAACTTCTGACAGGAGAGCAAGCCATTTCCTCGGATAGATCTGAACAAGGTCTAGCAAATCATTTTAGATCAGCAATGAAACAAAATCGTCTGTTTGATATTCTTGATAACCAAGTTGTAAATGAAGGACAGAAGGAGGAGATTTTCGCCGTTGCTAAGCTTACTAAGAGATGCCTAAAGTTGAATGGGAAAAAAAGTACAACATATGAAACCGGGTGTGCATCGCTTTGTCCAGACAATAACATCACTGTTGGTTTTTCTTCTTCCGCTTGCACTGGCATTGGTTGCTGCAGGACTGATCTCCAAACGGATATGACGTGGTTTTATCTGCGGATTCGCAGCATCAACATGCTCACACCAGCCTGGAACTATGAACCATGTAGCCTTGCTTTCATTGCGGAGAGGAACTTCTCCATAAGTGAAAATTTTGACCTCTCTAGTAAATTTGACAGGAATTTGTATTTTGTTCCAGCAATACTTGACTGGTCAGTTGGGAACGGCCAGGGGTATAAGTGTAACTGCTCTGAAGGCTACCAAGGGAATGCCTACCTTGCAAATGGCTGCCAAGATATTAATGAGTGCGAGGACCCAAACAAAATTTTTTGCCACGAGATAGCTCTTTGCACTAACGTCCCTGGCAGTTACTCATGCACTTGTCCAACTGGTTACCATGGAGATGGAAAGAAACAAGGAACTGGGTGCATACGTGGCAAGCATAAACATTTGCTAGCACTGGTATTTTCTTTAGGTGCGGGGATTTCTGTTGTTTCCTTGATCCTAATTGCTACAGGCTTAAGGTTATACCGAGGACTTAAGGAAAGAGAGAAAAAGAAAATAAAACAGAAGTTCTTCAAGAAGAATGGTGGTCTGCTATTGCAACAGCAAATTTCTTCAAGCAAAGAAAGTGTAGAAAAAACAAAACTCTATTCGGTAGAAGAGTTGGAGAGAGCAACAGATGGCTTCAATTCGAGTCGAGTCATTGGTAAGGGAGGCCTTGGCACAGTATACAAAGGAATGTTGTCGGATGGAAGCATTGTAGCCATTAAGAAATCCAATACCGTTGATGAAAAGCAATTGGACCAGTTCGTTAACGAAGTTTTCATTCTTTCACAGATCAACCATAGGCACATAGTAAGATTGCTAGGTTGTTGTCTGGAGACTGAAGGCCATGCATCTACATTATCTTGGAAAGACCGGCTGCGAATTGGGAGTGAAATTGCCGGAGCCCTGGCATATTTGCACTCATATGCTTCTATAGCCATCTGTCACAGGGATATCAAGTCTAGGAACATATTATTACATGCAACATACAAACTGCGCATCAATGATATTGCTTATCGTAGCTGTTTTAACAACCAATCAGGGAAGACTGATTCATCATATGTATCATATAATAGAACTCATCATTTCAGTTACTCCTTCACTCACAATAAGTTCATAGCCATTGGGTGTGACATATTTGCTTATATCACTGGGCACAACAGTACAGCATATGCAACCGGGTGTGCTTCGCTTTGTAATACTGGTAATGACATCACTGCTGGTTTTTCCTCTTCTGCTTGCTCAGGCATTGGTTGCTGCAGGACTTATCTCCAAACAGATATTGCATCTTTTTATCTCCGGATTCGCAGCATCAACATGATCACACCAACCTGGTCTTCTGAGCCATGTGGCCTTGCTTTCATAGCAGAGAGGAACTTCTCTATACGTGAACATTTTAACCTCTCTAGTAAATTTGACAAGAATTTGTATTTTGTCCCAGCAGTACTTGACTGGTCAGTTGGGGAAGTCTCTTGCCATGAAGCTATCAGAAGAAAAAACTATGCATGCGGCCAGAACACTTATTGCAACAACTCCATCCAGGGTCGGGGGTATAATTGTCACTGCCTTAACGGTTACCAAGGGAACCCCTACCTTGCAAATGGCTGCCAAGATATTAACGAATGCAACGACCCAAAACAAAATGCTTGCCACAAGATAGCTATTTGCAGTAACATCCCTGGCAGTTACTCATGCACTTGCCCAGCTGGTTACCATGGAGATGGCAAGACAAATGGAACTGGGTGCATACCTGGCAAGCGTAAACATTTGCTAGCACTGGTATTTTCTTTAGGTGTGGGGATTACTGTTGTTCCCTTGATCCTAATTGCTACGGGCCTATGGTTATACCGAAGACTTAAGGAAAGAGAGAAAAAGAAAATAAAACAGGAGTTCTTCAAGAAGAATGGTGGTCTGCTATTGCAACAGCAAATTTCTTCAAGCAAAGAAAGCGTAGAAAAAACAAAACTATCTGAACAAGGTCTAGCAAATCATTTTAGATCAGCAATGAAACAAAATCGTCTCTTTGAAATTCTTGATAACCAAGTTGTAAATGAAGGACAGAAGGAGGAGATTTTCGCCGTTGCTAAGCTTGCTAAGAGATGCCTAAAGTTGAATGGGAAAAAAAGGCCAACCATGAAACAAATTGATATAGACCTCCAACAATTGGGCAGATTTCAGGAGCAGTTGTCTTTTCAGAAGACAAAGATTCAAGAGCCTTCGTTGCAGCAGCAAACATGCCAGGACTACTTCACAGTAACAGGAAGTATGTTTATATATGCTATTGACTTCTGGAATAATGATGTAATGAATGGCTCCGAACTTTGTTTTACTTTCTTTAATTTGTTCCAGTATGGTACACATATTATTAGGGTCCAACTGGGGTTGAGGCTGCTTGACAATCAATCAAGGTCAACCTTTATATACACATCAAGTTCATTTTCCAAACCCAACAATTCAATTCAATCTAAGCTGCCTAAACTATTTTTTTTTAAATCTTGA 3762 0.4117 MFSKDINECEDPNKIFCHEIALCTNVPGSYSCTCPTSYHGDGKKQGTGCIRAGISVVSLILIATGLRLYRGLKEREKKKIKQKFFKKNGGLLLQQQISSSKESVEKTKLYSVEELERATDGFNSSRVIGKGGLGTVYKGMLSDGSIVAIKKSNTVDEKQLDQFVNEVFILSQINHRHIVRLLGCCLETEVPLLVYEYVSNGTLFHHLHDEGHASTLSWKDRLRIGSEIAGALAYLHSYASIAICHRDIKSRNILLDENLRAVVSDFGLSRSIPLDKTHLTALVQGTFGYLDPDYFHSGQFTDKSDVYAFGVVLAELLTGEQAISSDRSEQGLANHFRSAMKQNRLFDILDNQVVNEGQKEEIFAVAKLTKRCLKLNGKKSTTYETGCASLCPDNNITVGFSSSACTGIGCCRTDLQTDMTWFYLRIRSINMLTPAWNYEPCSLAFIAERNFSISENFDLSSKFDRNLYFVPAILDWSVGNGQGYKCNCSEGYQGNAYLANGCQDINECEDPNKIFCHEIALCTNVPGSYSCTCPTGYHGDGKKQGTGCIRGKHKHLLALVFSLGAGISVVSLILIATGLRLYRGLKEREKKKIKQKFFKKNGGLLLQQQISSSKESVEKTKLYSVEELERATDGFNSSRVIGKGGLGTVYKGMLSDGSIVAIKKSNTVDEKQLDQFVNEVFILSQINHRHIVRLLGCCLETEGHASTLSWKDRLRIGSEIAGALAYLHSYASIAICHRDIKSRNILLHATYKLRINDIAYRSCFNNQSGKTDSSYVSYNRTHHFSYSFTHNKFIAIGCDIFAYITGHNSTAYATGCASLCNTGNDITAGFSSSACSGIGCCRTYLQTDIASFYLRIRSINMITPTWSSEPCGLAFIAERNFSIREHFNLSSKFDKNLYFVPAVLDWSVGEVSCHEAIRRKNYACGQNTYCNNSIQGRGYNCHCLNGYQGNPYLANGCQDINECNDPKQNACHKIAICSNIPGSYSCTCPAGYHGDGKTNGTGCIPGKRKHLLALVFSLGVGITVVPLILIATGLWLYRRLKEREKKKIKQEFFKKNGGLLLQQQISSSKESVEKTKLSEQGLANHFRSAMKQNRLFEILDNQVVNEGQKEEIFAVAKLAKRCLKLNGKKRPTMKQIDIDLQQLGRFQEQLSFQKTKIQEPSLQQQTCQDYFTVTGSMFIYAIDFWNNDVMNGSELCFTFFNLFQYGTHIIRVQLGLRLLDNQSRSTFIYTSSSFSKPNNSIQSKLPKLFFFKS* 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0670 1253 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Vvi10g0670 1253 Pfam Calcium-binding EGF domain 959 1003 IPR001881 GO:0005509
Vvi10g0670 1253 Gene3D Laminin 963 1004 - -
Vvi10g0670 1253 ProSiteProfiles EGF-like domain profile. 959 998 IPR000742 -
Vvi10g0670 1253 FunFam Wall-associated receptor kinase 2 198 394 - -
Vvi10g0670 1253 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 23 34 IPR000152 -
Vvi10g0670 1253 SMART egfca_6 959 1004 IPR001881 GO:0005509
Vvi10g0670 1253 SMART egfca_6 5 50 IPR001881 GO:0005509
Vvi10g0670 1253 SMART egfca_6 504 549 IPR001881 GO:0005509
Vvi10g0670 1253 FunFam Wall-associated receptor kinase 2 92 197 - -
Vvi10g0670 1253 Pfam EGF domain 9 43 IPR024731 -
Vvi10g0670 1253 Pfam EGF domain 508 542 IPR024731 -
Vvi10g0670 1253 FunFam Fibrillin 2 954 999 - -
Vvi10g0670 1253 CDD EGF_CA 959 995 - -
Vvi10g0670 1253 Gene3D Laminin 1 45 - -
Vvi10g0670 1253 FunFam Uncharacterized protein 507 546 - -
Vvi10g0670 1253 SUPERFAMILY EGF/Laminin 5 43 - -
Vvi10g0670 1253 ProSitePatterns Calcium-binding EGF-like domain signature. 959 986 IPR018097 GO:0005509
Vvi10g0670 1253 CDD EGF_CA 5 41 - -
Vvi10g0670 1253 Gene3D Transferase(Phosphotransferase) domain 1 701 791 - -
Vvi10g0670 1253 ProSitePatterns Calcium-binding EGF-like domain signature. 5 32 IPR018097 GO:0005509
Vvi10g0670 1253 CDD EGF_CA 504 540 - -
Vvi10g0670 1253 SMART egf_5 912 958 IPR000742 -
Vvi10g0670 1253 SMART egf_5 507 549 IPR000742 -
Vvi10g0670 1253 SMART egf_5 962 1004 IPR000742 -
Vvi10g0670 1253 SMART egf_5 8 50 IPR000742 -
Vvi10g0670 1253 ProSitePatterns Calcium-binding EGF-like domain signature. 504 531 IPR018097 GO:0005509
Vvi10g0670 1253 Gene3D Phosphorylase Kinase; domain 1 86 197 - -
Vvi10g0670 1253 Gene3D Phosphorylase Kinase; domain 1 599 700 - -
Vvi10g0670 1253 SMART serkin_6 122 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0670 1253 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 522 533 IPR000152 -
Vvi10g0670 1253 ProSiteProfiles Protein kinase domain profile. 635 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0670 1253 SUPERFAMILY EGF/Laminin 958 997 - -
Vvi10g0670 1253 SUPERFAMILY EGF/Laminin 503 542 - -
Vvi10g0670 1253 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Vvi10g0670 1253 FunFam Wall-associated receptor kinase 2 605 705 - -
Vvi10g0670 1253 Gene3D Transferase(Phosphotransferase) domain 1 198 395 - -
Vvi10g0670 1253 Gene3D Transferase(Phosphotransferase) domain 1 1060 1168 - -
Vvi10g0670 1253 SUPERFAMILY Protein kinase-like (PK-like) 100 378 IPR011009 -
Vvi10g0670 1253 SUPERFAMILY Protein kinase-like (PK-like) 613 758 IPR011009 -
Vvi10g0670 1253 ProSiteProfiles EGF-like domain profile. 5 41 IPR000742 -
Vvi10g0670 1253 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 977 988 IPR000152 -
Vvi10g0670 1253 FunFam Os05g0270875 protein 1060 1162 - -
Vvi10g0670 1253 ProSiteProfiles Protein kinase domain profile. 122 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0670 1253 Pfam Protein kinase domain 123 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0670 1253 Pfam Protein kinase domain 636 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0670 1253 ProSitePatterns Serine/Threonine protein kinases active-site signature. 735 747 IPR008271 GO:0004672|GO:0006468
Vvi10g0670 1253 Gene3D Laminin 477 543 - -
Vvi10g0670 1253 Gene3D Laminin 912 962 - -
Vvi10g0670 1253 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 779 1075 IPR045274 GO:0007166
Vvi10g0670 1253 ProSiteProfiles EGF-like domain profile. 504 540 IPR000742 -
Vvi10g0670 1253 FunFam Uncharacterized protein 8 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0670 Vvi-Chr10 9357356 9407963 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0670 480 765 Receptor kinase-like Gene Family AT1G79670 44.516 2.86e-64 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi10g0670 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0670 - - vvi:100267910 724.931