Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0662 ATGGCCAAGCCTGGTTGCCCGAAGACATGTGGGAACATTGCCATTGTTTATCCATTTGGTATTGGAAAAGGCTGCTACCTTGACAAACGTTTTGAGATCACATGCAACAACTCCTTCAATCCTATTCTCCACCTCAACCAGATGCGTGATGCTGAAGTTTTGGATATGTCTCTGGAACATTTGAGAATCAGAGTTCAGACCAGGCCTTTTTGTTATACCAATTACACATCCGAAGGGGAACGTTATGCGCAGTTCACATTTGCACCCATGGAGCCTTTCAGCTTTTCCCATACTGAAAACAAGTTCATAGGCATTGGGTGTGACATATTTGCTTACATTGGTTGCTGCCAGACTACTTTCCCCAGCGATCTTTCTAATATTGTTTTACGGGTTGGTAACATGAGCGTCTGGCATGAGGCCAGCAACTGGACCTCGAATCATTGTAGCATTCTCCTTATTGCAGAGAAGAACTTCTCTGAATTCCACCAATTTGAAATCTCGTTTTCCAATCAAAAGAAGTACTTTTATCCTGCAGTTATTAATTGGGAAATTGGGAATAAGTCTTGCCTTGAAGCAGAAAAAGGAGGAGATTATACATGTGGCAGCAACAGTGGTTGTGTTAATTCCGAGAAAGGCAGTGGATATAGGTGTCGTTGCAATCCAGGCTACAGCGGGAATCCCTACCTTCCAGATGGCTGCATAGATGTTGATGAGTGCATGGAGTCAAACAATACTCTTTGCCAAAAAGGAGCTGTTTGCACTAACACTAATGGTAGCTACTATTGCGACTGCCCACCTGGTTACTATAGAGATGATGACAAACCTGAATATGAGTGTGTACGCAACAAAGGAAAACTCAATCCAGCTCTTCTTGTTTCTTCAGGAATAGTAGTCACTCTTGTTCTTCTCATCCTACTTGCTATTGGCTTTTGGTTGAATCAAAAGCTTGAGAAGAGAAAGAAAAGCAAACTCAAGCAGATGTCCTTCAAGAAGAATGGTGGTCTTCTACTGCAACAGCAAATCTCTTCAAGTAGTATAGGAAGTAGCGTTGAGAAAACAAAACTCTATACCATAGAAGAGTTGGAGAAGGCAACAGACAATTTCAATGCAGGTAGAGTTCTTGGAAAGGGAGGTCGTGGTAAAGTATACAAAGGGATGCTATTAGATGGAAGCATAGTGGCCATTAAGAAATCAATTTTAATTGATGAAAGGCAAGTTGTTGAGTTTATCAACGAAGTTTTCATTCTTTCACAGATTAACCATAGGCACATAGTGAAACTGTTAGGTTGCTGTTTGGAGAGTGAAGTTCCTTTACTGGTTTATGAATACGTCTCCAATGATACTCTCTCCCACCATCTCCATAATGAGGACCATGCATCAACTTTGTCTTGGGAAGAGCGATTGCGAATTGCAGATGAAATTGCAGGAGCCCTAGCATATTTACATTCATATGCTTCTACAGCTATCCTTCATAGGGATATCAAGTCTAGGAACATACTGCTGGATGAGAACTTCAGGGCTGTGGTTTCTGATTTTGGACTTTCAAGGTCAATTGCCCATGAAAAAACACACTTGAGCACAGCAGTGCAGGGCACATTTGGTTACTTGGATCCAGAGTATTTTCGGTCAGGTCAGTTTACAGACAAAAGTGATGTATACGGGTTTGGGATGATTCTTGCTGAACTTCTCACGGGTGAAAAAGTGATTTGTTCTAGTAGATCTGAAGAAAGTCTAGCAATTCATTTTAGACTGTCAATGAAACAAAATTGCCTGTTTGAAATTCTAGACAAGGTGATAGTGAACGAAGGTCAGAAAAAGGAGATTCTTGCTGTTGCTAAAATTGCTAAGAGATGCCTGAAGTTGAGTGGGAAGAAAAAGCCAGCCATGAAAGAAATAGCAGCAGATCTCCACCAATTGAGGAGGACTATGAAGCAGCCATCACTTCAGCAGACCTGCCAGGACAACTGCCCTGTAAGTGGAAGGTACTTCTTTTCTTCCGCATCCACAAGTGCAGTTACAGAAGAGTATGCACTTCAAGGCTAG 2043 0.4175 MAKPGCPKTCGNIAIVYPFGIGKGCYLDKRFEITCNNSFNPILHLNQMRDAEVLDMSLEHLRIRVQTRPFCYTNYTSEGERYAQFTFAPMEPFSFSHTENKFIGIGCDIFAYIGCCQTTFPSDLSNIVLRVGNMSVWHEASNWTSNHCSILLIAEKNFSEFHQFEISFSNQKKYFYPAVINWEIGNKSCLEAEKGGDYTCGSNSGCVNSEKGSGYRCRCNPGYSGNPYLPDGCIDVDECMESNNTLCQKGAVCTNTNGSYYCDCPPGYYRDDDKPEYECVRNKGKLNPALLVSSGIVVTLVLLILLAIGFWLNQKLEKRKKSKLKQMSFKKNGGLLLQQQISSSSIGSSVEKTKLYTIEELEKATDNFNAGRVLGKGGRGKVYKGMLLDGSIVAIKKSILIDERQVVEFINEVFILSQINHRHIVKLLGCCLESEVPLLVYEYVSNDTLSHHLHNEDHASTLSWEERLRIADEIAGALAYLHSYASTAILHRDIKSRNILLDENFRAVVSDFGLSRSIAHEKTHLSTAVQGTFGYLDPEYFRSGQFTDKSDVYGFGMILAELLTGEKVICSSRSEESLAIHFRLSMKQNCLFEILDKVIVNEGQKKEILAVAKIAKRCLKLSGKKKPAMKEIAADLHQLRRTMKQPSLQQTCQDNCPVSGRYFFSSASTSAVTEEYALQG* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0662 680 Pfam Calcium-binding EGF domain 235 273 IPR001881 GO:0005509
Vvi10g0662 680 Gene3D Laminin 187 238 - -
Vvi10g0662 680 ProSiteProfiles EGF-like domain profile. 235 276 IPR000742 -
Vvi10g0662 680 SUPERFAMILY Growth factor receptor domain 186 269 IPR009030 -
Vvi10g0662 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672|GO:0006468
Vvi10g0662 680 Pfam Protein kinase domain 369 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0662 680 Gene3D Transferase(Phosphotransferase) domain 1 444 659 - -
Vvi10g0662 680 FunFam Uncharacterized protein 238 280 - -
Vvi10g0662 680 SMART serkin_6 368 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0662 680 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 253 264 IPR000152 -
Vvi10g0662 680 SMART egfca_6 235 280 IPR001881 GO:0005509
Vvi10g0662 680 FunFam Wall-associated receptor kinase 2 336 443 - -
Vvi10g0662 680 CDD STKc_IRAK 374 639 - -
Vvi10g0662 680 ProSiteProfiles Protein kinase domain profile. 368 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0662 680 FunFam Wall-associated receptor kinase 2 444 657 - -
Vvi10g0662 680 Gene3D Phosphorylase Kinase; domain 1 333 443 - -
Vvi10g0662 680 CDD EGF 200 228 - -
Vvi10g0662 680 FunFam Wall-associated receptor kinase 2 187 237 - -
Vvi10g0662 680 SUPERFAMILY Protein kinase-like (PK-like) 354 658 IPR011009 -
Vvi10g0662 680 ProSitePatterns Calcium-binding EGF-like domain signature. 235 262 IPR018097 GO:0005509
Vvi10g0662 680 Pfam Wall-associated receptor kinase galacturonan-binding 6 65 IPR025287 GO:0030247
Vvi10g0662 680 CDD EGF_CA 235 269 - -
Vvi10g0662 680 Gene3D Laminin 239 281 - -
Vvi10g0662 680 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 2 644 IPR045274 GO:0007166
Vvi10g0662 680 SMART egf_5 188 234 IPR000742 -
Vvi10g0662 680 SMART egf_5 238 280 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0662 Vvi-Chr10 9196414 9204109 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0662 3 640 Receptor kinase-like Gene Family AT1G21230 41.618 1.15e-163 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi10g0662 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0662 - - vvi:100254262 1137.48