Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0658 ATGGCCAAGCCTGGTTGCCCTGAGACATGTGGGAACGTCAGCATCGTTTATCCATTTGGTATCGGCAAAGGTTGTTACCTTGACAAACGTTTTGAGATCACATGCAACAATTCTAGTCTGCCTCATCCACTTTTCCACGTGGACGAGGAAAATGAAGCTGAAGTTCTGTATATGTCTCTGGAGTATATGAGAATCAAAGATTGGACTTCCCCTGTTTGTTATGCGAATTACACATCAGAAGGACAAAGTTATGCCCTGTTCTCAATTGCGCCGATGGAGCCTTTCAGTTATTCCCACACTGAAAATAAGTTCATTGGCATTGGATGCGACATATTTGCTTATATTGGTTATTCCAATACTACAAATTTCATCAACAAAAGCTACATTAGCGGGTGTGTCTCCATCTGCAGTGGCCAAGGCTGGTCTTGGCTTGATACTAACTATTCTTGCTCTGGCATTGGTTGCTGCCAGACTACTTTTCCCGTGGATCTTTCCATCTTTGAGATACAGAGTGGTAAGATGAGCGCCAGGGCTGACAGCTGGGACCGGTCCTCCAATCAATGTAGACTTGTCCTCATTGCTGAGAATAACTTCTCTGAATTCCACCAATTTGACGTCTCTTTCTCCAATGTAAACAAGACGTACTTTTACCCTTCAGTATTGAATTGGGCAATAGGAAACAAGTCTTGCCACGAAGCTCAAAAAAGAGGAGATTATGCATGTGGCAGCAATAGTCGCTGCGTTAATTCCAAGAAAGGCAGTGGATATACTTGTCAATGCAACTCAGGCTACCGTGGGAATCCCTACCTTCCAGATGGCTGTGGAGATGTTGATGAGTGCATGGAGTCAAACAATACTCTTTGCCAAAAAGGAGCTGTTTGCACTAACACGAATGGTAGCTACTATTGCGACTGTCCACCTGGTTACTACAGAGATGATGACAAACCTGAATATGAGTGTGTACGCGATAAAGGAAAACACAATCCAGCTCTTCTTGTTTCTTCAGGAATAGCAGTCACTCTTGTTCTTCTCATCCTACTTGCTATTAGCTTTTGGTTGAATCAAAAACTTGAGAAGAGAAAGAAAAGCAAACTCAAGCAGATGTCCTTCAAGAAGAATGGTGGTCTTCTACTGCAACGGCAAATCTCTTCAAGTAGTATAGGAAGTAGCGTTGAGAAAACAAAACTCTATACCATAGAAGAGTTGGAGAAGGCAACAGACAATTTCAATGCAGGTAGAGTTCTTGGAAAGGGAGGTCATGGTAAAGTATACAAAGGGATGCTATTAGATGGAAGCATAGTGGCCATTAAGAAATCAATTGTAGTTGATGAAAGGCAAGTTGTTGAGTTTATCAACGAAGTTTTCATTCTTTCACAGATTAACCATAGGCACATAGTGAAACTGTTAGGTTGCTGTTTGGAGAGTGAAGTTCCTTTACTGGTTTATGAATACGTCTCCAATGATACTCTCTCCCACAATCTCCATAATGAGGACCATGCATCAACATTGTGTTGGGAAGAGCGCTTGCGAATTGCAGATGAAATTGCAGGAGCCCTAGCATATTTACATTCATATGCTTCTACAGCTATCCTTCATAGGGATATCAAGTCTAGGAACATACTGCTGGATGAGAACTTCAGGGCTGTGGTTTCTGATTTTGGACTTTCAAGGTCAATTGCCCCTGAAAAAACACACTTGAGCACATTAGTGCAGGGCACATTTGGTTACTTGGATCCAGAGTATTTTCGGTCGGGTCAGTTTACAGACAAAAGTGATGTATACGGGTTTGGGATGATTCTTGCTGAACTTCTCACGGGTGAAAAAGTGATTTGTTCTAGTAGATCTGAAGAGAGTCTAGCAATTCATTTTAGATTGGCAATGAAACAAAATTTCCTGTTTGAATTCTAG 1908 0.4177 MAKPGCPETCGNVSIVYPFGIGKGCYLDKRFEITCNNSSLPHPLFHVDEENEAEVLYMSLEYMRIKDWTSPVCYANYTSEGQSYALFSIAPMEPFSYSHTENKFIGIGCDIFAYIGYSNTTNFINKSYISGCVSICSGQGWSWLDTNYSCSGIGCCQTTFPVDLSIFEIQSGKMSARADSWDRSSNQCRLVLIAENNFSEFHQFDVSFSNVNKTYFYPSVLNWAIGNKSCHEAQKRGDYACGSNSRCVNSKKGSGYTCQCNSGYRGNPYLPDGCGDVDECMESNNTLCQKGAVCTNTNGSYYCDCPPGYYRDDDKPEYECVRDKGKHNPALLVSSGIAVTLVLLILLAISFWLNQKLEKRKKSKLKQMSFKKNGGLLLQRQISSSSIGSSVEKTKLYTIEELEKATDNFNAGRVLGKGGHGKVYKGMLLDGSIVAIKKSIVVDERQVVEFINEVFILSQINHRHIVKLLGCCLESEVPLLVYEYVSNDTLSHNLHNEDHASTLCWEERLRIADEIAGALAYLHSYASTAILHRDIKSRNILLDENFRAVVSDFGLSRSIAPEKTHLSTLVQGTFGYLDPEYFRSGQFTDKSDVYGFGMILAELLTGEKVICSSRSEESLAIHFRLAMKQNFLFEF* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0658 635 FunFam Wall-associated receptor kinase 2 377 484 - -
Vvi10g0658 635 Pfam Calcium-binding EGF domain 276 315 IPR001881 GO:0005509
Vvi10g0658 635 Gene3D Laminin 228 278 - -
Vvi10g0658 635 Gene3D Laminin 279 322 - -
Vvi10g0658 635 Pfam Wall-associated receptor kinase galacturonan-binding 6 62 IPR025287 GO:0030247
Vvi10g0658 635 SMART egfca_6 276 321 IPR001881 GO:0005509
Vvi10g0658 635 ProSiteProfiles EGF-like domain profile. 276 317 IPR000742 -
Vvi10g0658 635 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Vvi10g0658 635 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 2 634 IPR045274 GO:0007166
Vvi10g0658 635 SUPERFAMILY Protein kinase-like (PK-like) 383 622 IPR011009 -
Vvi10g0658 635 Gene3D Transferase(Phosphotransferase) domain 1 485 634 - -
Vvi10g0658 635 SMART serkin_6 409 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0658 635 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 294 305 IPR000152 -
Vvi10g0658 635 SMART egf_5 279 321 IPR000742 -
Vvi10g0658 635 SMART egf_5 229 275 IPR000742 -
Vvi10g0658 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Vvi10g0658 635 Pfam Protein kinase domain 410 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0658 635 FunFam Uncharacterized protein 279 321 - -
Vvi10g0658 635 ProSitePatterns Calcium-binding EGF-like domain signature. 276 303 IPR018097 GO:0005509
Vvi10g0658 635 CDD EGF_CA 276 310 - -
Vvi10g0658 635 FunFam Wall-associated receptor kinase-like 6 485 630 - -
Vvi10g0658 635 FunFam Wall-associated receptor kinase 2 228 278 - -
Vvi10g0658 635 SUPERFAMILY EGF/Laminin 276 315 - -
Vvi10g0658 635 ProSiteProfiles Protein kinase domain profile. 409 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0658 635 Gene3D Phosphorylase Kinase; domain 1 375 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0658 Vvi-Chr10 9143101 9146282 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0658 2 635 Receptor kinase-like Gene Family AT1G21230 41.277 1.28e-155 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi10g0658 Pkinase 4.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0658 - - vvi:100257794 1089.33