Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0654 ATGATTACAAACCATTTGAATTTAGTAAAAAAAATGTTGAATGTAATACCCCGTAAAATGGTTATGCAAATGATACAAGTTCTTGCGTTCACCATCTTGATCAGCATCATCTCCTTGCTATTCTCATTGAAGGAAACAGCAGCATCCATGGCCAAGCCTGGTTGCCCTGAGACATGTGGGAACGTCAGCATCGTTTATCCATTTGGTATTGGCAAAGGTTGTTACCTTGACAAACGTTTTGAGATCACATGCAACAATTCTAGTCTGCCTCATCCACTTTTCCACGTGGACGAGGAAAATGAAGCTGAAGTTCTGTATATGTCTCTGGAGTATATGAGAATCAGAGATTGGGCTTCCCCTGATTGTTATGCGAATTACACATCAGAAGGGCAAAGTTATGCCCAGTTCCCAGTTGCGCCGATGGAGCCTTTCAGTTATTCCCACACTGAAAATAAGTTCATTGGCATTGGCTGCGACATATTTGCTTATATTGGTTATTCCAATACTACAAATTCCACCAACAAAAGCTACATTAGCGGGTGTGTCTCCGTCTGCAATGGCCAAGGCTGGTCTTGGCTTGATACTAACTATTCTTGCTCTGGCATTGGTTGCTGCCAGAATACTTTTCCCGAGGATCTTTCCATCTTTGAGATACGGATTGGTAACATGAGCACCTGGGCTGACGGCGGGGACTGGCCCTCCAATCAATGTAGCCTTGTCCTCATTGCTGAGAATAACTTCTCTGAATTCCACCAATTTGACGTCTCTTTCTCCAATGTAAACAAGACGTACTTTTACCCTTCAGTATTGAATTGGGCAATAGGAAACAAGTCTTGCCACGAAGCTCAAAAAAGAGGAGATTATGCATGTGGCAGCAATAGTCGCTGCGTTAATTCCAAGAAAGGCAGTGGATATACTTGTCAATGCAACTCAGGCTACCGTGGGAATCCCTACCTTCCAGATGGCTGTGGAGATGTTGATGAGTGCATGGAGTCAAACAATACTCTTTGCCAAAAAGGAGCTGTTTGCACTAACACGAATGGTAGCTACTATTGCGACTGCCCACCTGGTTACTACAGAGATGATGACAAACCTGAATATGAGTGTGTACGCCACAAAGGAAAACACAATCCAGCTCTTCTTGTTTCTTCAGGAATAGCAGTCACTCTTGTTCTTCTCATCCTACTTGCTATTAGCTTTTGGTTGAATAAAAAACTTGAGAAGAGAAAGAAAAGCAAACTCAAGCAGATGTCACTCAAGAAGAATGGTGGTCTTCTACTGCAACGGCAAATCTCTTCAAGTAGTATAGGAAGTAGCGTTGAGAAAACAAAACTCTATACCATAGAAGAGTCGGAGAAGGCAACAGACAATTTCAATGCAGGTAGAGTTCTTGGAAAGGGAGGTCATGGTAAAGTATACAAAGGGATGCTATTAGATGGAAGCATAGTGGCCATTAAGAAATCAATTGTAGTTGATGAAAGGCAAGTTGTTGAGTTTATCAACGAAGTTTTCATTCTTTCACAGATTAACCATAGGCACATAGTGAAACTGTTAGGTTGCTGTTTGGAGAGTGAAGTTCCTTTACTGGTTTATGAATACGTCTCCAATGATACTCTCTCCCACCATCTCCATAATGAGGACCATGCATCAACATTGTCTTGGGAAGAGCGCTTGCGAATTGCAGATGAAATTGCAGGAGCCCTAGCATATTTACATTCATATGCTTCTACAGCTATCCTTCATAGGGATATCAAGTCTAGGAACATACTGCTGGATGAGAACTTCAGGGCTGTGGTTTCTGATTTTGGACTTTCAAGGTCAATTGCCCATGAAAAAACACACTTGAGCACATTAGTGCAGGGCACATTTGGTTACTTGGATCCAGAGTATTTTCGGTCGGGTCAGTTTACAGACAAAAGTGATGTATACGGGTTTGGGATGATTCTTGCTGAACTTCTCACGGGTGAAAAAGTGATTTTAAAGAAAATTGATAATGAGAAGAATATTATTTCTTGTTTTACTTTCAGTACAGGTTACAACTCTTATACACAATGGATACCAATCCGATCCACAATTGGAGGACTAACTATAGTAATGCAGATCAATTAA 2109 0.4135 MITNHLNLVKKMLNVIPRKMVMQMIQVLAFTILISIISLLFSLKETAASMAKPGCPETCGNVSIVYPFGIGKGCYLDKRFEITCNNSSLPHPLFHVDEENEAEVLYMSLEYMRIRDWASPDCYANYTSEGQSYAQFPVAPMEPFSYSHTENKFIGIGCDIFAYIGYSNTTNSTNKSYISGCVSVCNGQGWSWLDTNYSCSGIGCCQNTFPEDLSIFEIRIGNMSTWADGGDWPSNQCSLVLIAENNFSEFHQFDVSFSNVNKTYFYPSVLNWAIGNKSCHEAQKRGDYACGSNSRCVNSKKGSGYTCQCNSGYRGNPYLPDGCGDVDECMESNNTLCQKGAVCTNTNGSYYCDCPPGYYRDDDKPEYECVRHKGKHNPALLVSSGIAVTLVLLILLAISFWLNKKLEKRKKSKLKQMSLKKNGGLLLQRQISSSSIGSSVEKTKLYTIEESEKATDNFNAGRVLGKGGHGKVYKGMLLDGSIVAIKKSIVVDERQVVEFINEVFILSQINHRHIVKLLGCCLESEVPLLVYEYVSNDTLSHHLHNEDHASTLSWEERLRIADEIAGALAYLHSYASTAILHRDIKSRNILLDENFRAVVSDFGLSRSIAHEKTHLSTLVQGTFGYLDPEYFRSGQFTDKSDVYGFGMILAELLTGEKVILKKIDNEKNIISCFTFSTGYNSYTQWIPIRSTIGGLTIVMQIN* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0654 702 Pfam Wall-associated receptor kinase galacturonan-binding 55 111 IPR025287 GO:0030247
Vvi10g0654 702 SMART egfca_6 325 370 IPR001881 GO:0005509
Vvi10g0654 702 SMART serkin_6 458 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0654 702 CDD EGF_CA 325 359 - -
Vvi10g0654 702 ProSitePatterns Calcium-binding EGF-like domain signature. 325 352 IPR018097 GO:0005509
Vvi10g0654 702 Gene3D Phosphorylase Kinase; domain 1 430 533 - -
Vvi10g0654 702 FunFam Wall-associated receptor kinase 2 277 327 - -
Vvi10g0654 702 ProSiteProfiles EGF-like domain profile. 325 366 IPR000742 -
Vvi10g0654 702 ProSiteProfiles Protein kinase domain profile. 458 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0654 702 SUPERFAMILY Protein kinase-like (PK-like) 432 662 IPR011009 -
Vvi10g0654 702 Pfam Calcium-binding EGF domain 325 363 IPR001881 GO:0005509
Vvi10g0654 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 579 591 IPR008271 GO:0004672|GO:0006468
Vvi10g0654 702 SUPERFAMILY EGF/Laminin 325 364 - -
Vvi10g0654 702 FunFam Uncharacterized protein 328 370 - -
Vvi10g0654 702 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 45 681 IPR045274 GO:0007166
Vvi10g0654 702 Gene3D Laminin 328 371 - -
Vvi10g0654 702 FunFam Wall-associated receptor kinase 2 426 533 - -
Vvi10g0654 702 Gene3D Transferase(Phosphotransferase) domain 1 534 686 - -
Vvi10g0654 702 Pfam Protein kinase domain 459 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0654 702 FunFam Wall-associated receptor kinase-like 6 534 682 - -
Vvi10g0654 702 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 343 354 IPR000152 -
Vvi10g0654 702 ProSitePatterns Protein kinases ATP-binding region signature. 464 487 IPR017441 GO:0005524
Vvi10g0654 702 SMART egf_5 328 370 IPR000742 -
Vvi10g0654 702 SMART egf_5 278 324 IPR000742 -
Vvi10g0654 702 Gene3D Laminin 277 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0654 Vvi-Chr10 9103457 9108748 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0654 36 686 Receptor kinase-like Gene Family AT1G21230 39.668 7.27e-148 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi10g0654 Pkinase 2.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0654 - - vvi:100257794 1122.46