Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0653 ATGGCTTTGCAAGTAATACAAGTTCATCTGGTCACCATCATCATCAGCATCATCTCCTTGGTATTCTCATTGAAGGAAACGAAAGCATCCACAGCCAAGCCTGGTTGCCCAGAGACATGTGGGAATCTTGCCATTGTTTATCCATTTGGTATTGGAGAAGGTTGCTACCTTGACAAACGTTTTGAGATCACATGCAACAACTCTTCCAATCCTCACCCTGTTCTCCGCCTCGACCAGAAAAAAGAAGCTGAAGTTTTGGATATGTCTCTGGAACATGTGAGAATCAGAGATTGGACTTCGCCTCTTTGTTATGCCAATAACGCATTGGAAGGGAAAAGCTATTCCCAGTTCACATTAGCGCCCCCCATGGAGCCTTTCAGTTATTCCCACACTGAAAACAAGTTGATAGGCATTGGGTGTGACATATTTGCTTACATTGGCGATTTCCATAGTACAAATTCCAGCATCAAAAACTTCATCAGTGGGTGTGTCTCCATCTGCAATGGCCAAGGCTGGTCTTGGCTTGATACTAACTACTCCTGCTCTGGCATTGGCTGCTGCCAGACTACTTTCCCTTATGATCTTCCCAATTTTGATGTACGGGTTGGTAACATGAGCATCTGGCAAGAGGCCAAGGACTGGTCCTCCAATCAATGTTGCATTGTCCTCATTGCAGAGAATAACTTCTCTGGATTCCACCAATTTGACATCTCATTCTCCAATCAAAACATGAAGTACTTTTATCCTGCAGTGCTTAAATGGGAAATCGGGAACAAGTCCTGCCATGAAACACAAAAGAGAGGAGATTATGCATGTGGCCGCAACAGTCATTGTATTAATTCCAAGAAAGGCAGTGGATATAGGTGTCTTTGCAATCCAGGCTACCGCGGGAACCCCTATCTTCCAGATGGCTGCATAGATGTTGATGAGTGCATGGAGTCAAACAATACTCTTTGCCAAAAAGGAGCTGTTTGCACTAACAAGAATGGTAGCTACTATTGCGACTGCCCACCTGGTTACTACAGAGATGATGACAAACCTGAATATGAGTGTGTACGCAACAAAGGAAAACTCAAGCCAGCTCTTCTTGTTTCTTCAGGTATAACATTTTCCCAATGTCTCCCTCATGTTCACCCTCTTCTTGCTCTTGAGTTTGTTGTTAATTACGTACCTTTGTGGCTTATACATGCAGGAATAGTAGTCACTCTTGTTCTTCTCATCCTACCTTCTATTGGCTTTTGGTTGAATCAAGAACTTGAGAAGAGAAAGAAAAGCAAACTCAAGCAGATGTCCTTCAAGAAGAATGGTGGTCTTCTAATGCAACAGCAAATCTCTTCAAGTAGTATAGGAAGTAGCGTTGAGAAAACAAAACTCTATACCATAGGAGAGTTGGAGAAGGCAACAGACAATTTCAATGCAGGTAGAGTTCTTGGAAAGGGAGGTCGTGGTAAAGTATACAAAGGGATGCTATTAGATGGAAGCATAGTGGCCATTAAGAAATCAATTGTAGTTGATGAAAGGCAAGTCGTTGAGTTTATCAACGAAGTTTTCATTCTTTCACAGATTAACCATAGGCACATAGTGAAACTGTTAGGTTGCTGTTTGGAGAGTGAAGTTCCTTTACTGGTTTATGAATACATCTCCAATAACACTCTCTCCCACCATCTCCATAATGAGGACCATGCATCAACATTGTCTTGGGAAAAGCGGTTGCGAATTGCAGATGAAATTGCAGGAGCCCTAGCATATTTACATTCATATGCTTCTACAGCTATCCTTCATAGGGATATCAAGTCTAGGAACATACTGCTGGATGAGAACTTCAGGGCTGTGGTTTCTGATTTTGGACTTTCAAGGTTAATTGCCCATGAAAAAACACACTTGAGCACATTAGTGCAGGGCACATTTGGTTACTTGGATCCAGAATATTTTCGGTCGGGTCAGTTTACAGATAAAAGTGATGTATACGGGTTTGGGATGATTCTTGCTGAACTTCTCACGGGTGAAAAAGTGATTTGTTCTAGTAGATCTGAAGAAAGTCTAGCAATTCATTTTAGATTGGCAATGAAACAAAATTGCCTGTTTGAAATTCTAGACAAGGTGATAGTGAATGAAGGTCAGAAAAAGGAGATTCTTGCTGTTGCTAAAATTGCTAAGAGATGCCTGAAGTTGAGTGGGAAGAAAAGGCCAGCCATGAAAGAAATAGCAGCAGATCTCCACCAATTGAGGACTATGAAGCAGCCATCACTTCAGCAGACCTGCCAGGACAACTGCTCTGTAAGTGAAAGGTACTCCATTTCTTCTGCATCAACAATAATACTAGATCATCCGGTCACCATCATCATCCTCTTGCTATTCTCATCGAAGGAAACAGCAGCGTCCATGGCAAAGCCTGGTTGCCAAGAGACATGTGGGAACGTTGGGATTGTTTATCCATTTGGTATTGGCAGAGGCTGCTACCATGACAAAAATTTTGAGGTCTCATGCGCCTACTCCTCCAACCCTCCACGCCCTTCTCTTGTGGTGCTTCAAGTTGAAGTTTTGAAGACGTCACCGGATAATGTGAGAATTTGTGATTGGACTGTGGCTGCTTGTTACTTTGATTACACATCACAAGCGGCATCGGCTTTTACGCCCATGGAGCCTTACAGTTATTCCCACGCAGAAAATAAGTTTATAGGCATTGGGTGTGACATAGGTGCTTATATCGGTGAATTAAATCGTACAAGCCGTAGCCTAACAAGATACGCGGGCGGGTGTGTGTCAGTTTGCCACATACCTGGAGGTCAAGCCTGGTCTAATCGTACTTCCTGCTCTGGAATTCGCTGCTGCCAGACTACTTTCTCAAACGATCTTTCAAACGTTGATCTATGGCTTACCAACATGAGCATGTGGTCCAAGGCCATGGCCGGGTCGAACTCCAATCCATGTAGCTTTGCCATCATTGCCGAGAAGAACTTCTCGGACTTTGATCGATTTGACACCACGTTGTCCGGTGAAAACAAAACCTACTTTTACCCTGCAATATTGAATTGGGCAATCGGAAACAAATCTTGCCAAGAAGCCCGAAAAAGAAGCCATTATGCATGTGGCAGCAACAGTCGTTGTGTTGATTCTGATCAAGGCAGTGGATATAAGTGTCGTTGCAGTCAAGGCTACCGCGGGAACCCTTACCTTCAAGATGGCTGCATAGATATTAATGAGTGCATGGACCCAAACAACACTCTTTGCAAAAAAGGAGCTGTATGCATAAACACATATGGAGGCTACTATTGTGCCTGCCCACCTGGTTACCATAGCCATGATAGCCAACCTGAACATGGGTGTGTACGTGACAAAGTAAAACTAAAGGCAGCTATTCTCGTTACATCAGGTATAGACTCTCTCCCGTGTCCACCCTTTTCTTTCTCTTCAGTTTGTATTTACCTTTGTGGCTTATACATTCAGGAATAG 3453 0.4327 MALQVIQVHLVTIIISIISLVFSLKETKASTAKPGCPETCGNLAIVYPFGIGEGCYLDKRFEITCNNSSNPHPVLRLDQKKEAEVLDMSLEHVRIRDWTSPLCYANNALEGKSYSQFTLAPPMEPFSYSHTENKLIGIGCDIFAYIGDFHSTNSSIKNFISGCVSICNGQGWSWLDTNYSCSGIGCCQTTFPYDLPNFDVRVGNMSIWQEAKDWSSNQCCIVLIAENNFSGFHQFDISFSNQNMKYFYPAVLKWEIGNKSCHETQKRGDYACGRNSHCINSKKGSGYRCLCNPGYRGNPYLPDGCIDVDECMESNNTLCQKGAVCTNKNGSYYCDCPPGYYRDDDKPEYECVRNKGKLKPALLVSSGITFSQCLPHVHPLLALEFVVNYVPLWLIHAGIVVTLVLLILPSIGFWLNQELEKRKKSKLKQMSFKKNGGLLMQQQISSSSIGSSVEKTKLYTIGELEKATDNFNAGRVLGKGGRGKVYKGMLLDGSIVAIKKSIVVDERQVVEFINEVFILSQINHRHIVKLLGCCLESEVPLLVYEYISNNTLSHHLHNEDHASTLSWEKRLRIADEIAGALAYLHSYASTAILHRDIKSRNILLDENFRAVVSDFGLSRLIAHEKTHLSTLVQGTFGYLDPEYFRSGQFTDKSDVYGFGMILAELLTGEKVICSSRSEESLAIHFRLAMKQNCLFEILDKVIVNEGQKKEILAVAKIAKRCLKLSGKKRPAMKEIAADLHQLRTMKQPSLQQTCQDNCSVSERYSISSASTIILDHPVTIIILLLFSSKETAASMAKPGCQETCGNVGIVYPFGIGRGCYHDKNFEVSCAYSSNPPRPSLVVLQVEVLKTSPDNVRICDWTVAACYFDYTSQAASAFTPMEPYSYSHAENKFIGIGCDIGAYIGELNRTSRSLTRYAGGCVSVCHIPGGQAWSNRTSCSGIRCCQTTFSNDLSNVDLWLTNMSMWSKAMAGSNSNPCSFAIIAEKNFSDFDRFDTTLSGENKTYFYPAILNWAIGNKSCQEARKRSHYACGSNSRCVDSDQGSGYKCRCSQGYRGNPYLQDGCIDINECMDPNNTLCKKGAVCINTYGGYYCACPPGYHSHDSQPEHGCVRDKVKLKAAILVTSGIDSLPCPPFSFSSVCIYLCGLYIQE* 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0653 1150 SUPERFAMILY EGF/Laminin 1064 1103 - -
Vvi10g0653 1150 ProSitePatterns Calcium-binding EGF-like domain signature. 1065 1092 IPR018097 GO:0005509
Vvi10g0653 1150 SMART egfca_6 261 306 IPR001881 GO:0005509
Vvi10g0653 1150 SMART egfca_6 1065 1110 IPR001881 GO:0005509
Vvi10g0653 1150 SMART egfca_6 307 352 IPR001881 GO:0005509
Vvi10g0653 1150 CDD EGF_CA 307 341 - -
Vvi10g0653 1150 Gene3D Laminin 310 353 - -
Vvi10g0653 1150 FunFam Wall-associated receptor kinase 2 259 309 - -
Vvi10g0653 1150 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 1083 1094 IPR000152 -
Vvi10g0653 1150 SMART serkin_6 471 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0653 1150 Gene3D Transferase(Phosphotransferase) domain 1 547 767 - -
Vvi10g0653 1150 FunFam Uncharacterized protein 310 352 - -
Vvi10g0653 1150 Pfam Calcium-binding EGF domain 307 345 IPR001881 GO:0005509
Vvi10g0653 1150 Pfam Calcium-binding EGF domain 1065 1104 IPR001881 GO:0005509
Vvi10g0653 1150 Pfam Protein kinase domain 472 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0653 1150 FunFam Wall-associated receptor kinase 2 1017 1067 - -
Vvi10g0653 1150 FunFam Wall-associated receptor kinase 2 547 762 - -
Vvi10g0653 1150 CDD STKc_IRAK 477 742 - -
Vvi10g0653 1150 Gene3D Laminin 1017 1067 - -
Vvi10g0653 1150 Gene3D Laminin 259 309 - -
Vvi10g0653 1150 ProSiteProfiles EGF-like domain profile. 307 348 IPR000742 -
Vvi10g0653 1150 Gene3D Laminin 1068 1107 - -
Vvi10g0653 1150 ProSitePatterns Serine/Threonine protein kinases active-site signature. 592 604 IPR008271 GO:0004672|GO:0006468
Vvi10g0653 1150 SMART egf_5 260 306 IPR000742 -
Vvi10g0653 1150 SMART egf_5 1018 1064 IPR000742 -
Vvi10g0653 1150 SMART egf_5 310 352 IPR000742 -
Vvi10g0653 1150 SMART egf_5 1068 1110 IPR000742 -
Vvi10g0653 1150 FunFam Wall-associated receptor kinase 2 439 546 - -
Vvi10g0653 1150 SUPERFAMILY EGF/Laminin 306 346 - -
Vvi10g0653 1150 CDD EGF_CA 1065 1099 - -
Vvi10g0653 1150 ProSitePatterns Calcium-binding EGF-like domain signature. 307 334 IPR018097 GO:0005509
Vvi10g0653 1150 FunFam Uncharacterized protein 1068 1110 - -
Vvi10g0653 1150 ProSiteProfiles EGF-like domain profile. 1065 1104 IPR000742 -
Vvi10g0653 1150 Pfam Wall-associated receptor kinase galacturonan-binding 800 854 IPR025287 GO:0030247
Vvi10g0653 1150 Pfam Wall-associated receptor kinase galacturonan-binding 36 94 IPR025287 GO:0030247
Vvi10g0653 1150 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 325 336 IPR000152 -
Vvi10g0653 1150 Gene3D Phosphorylase Kinase; domain 1 434 546 - -
Vvi10g0653 1150 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 749 IPR045274 GO:0007166
Vvi10g0653 1150 ProSiteProfiles Protein kinase domain profile. 471 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0653 1150 SUPERFAMILY Protein kinase-like (PK-like) 457 764 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0653 Vvi-Chr10 9059785 9070691 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0653 17 743 Receptor kinase-like Gene Family AT1G21230 39.513 1.96e-159 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi10g0653 Pkinase 6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0653 - - vvi:100254262 1464.9