Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0648 ATGATGAAGCTCTGTACACTTTTGTTGGTGTCCCTACTGTTTGTATCTGCAATGGGGCAGCTTCCATCACAGGACATTTTGGCACTGCTCGAGTTCAAGAAGGGAATCAAGCATGATCCAACTGGTTATGTGCTTAATTCATGGAATGAGGAGTCCATAGACTTCAATGGGTGCCCTTCCTCTTGGAATGGCATTGTTTGTAATGGTGTCAATGTTGCTGGGGTGGTTCTTGATCACCAGGGTCTTTCTGCTGATGTTGATTTGAGTGTATTTTCGAATCTCACAATGCTGGTGAAACTCTCAATGTCAGGAAACTCCATTTCAGGCAAAATTCCTGATAACATTGGCGACTTAAAAAGCCTTGAGTATTTGGATCTCTCGGACAATCTGTTTTTCTCATCTTTACCACCAGGGATTGGGAAGTTGGCAAATTTAAAGAACCTGTCATTAGCAGGCAACAACTTCTCTGGCTCAATTCCAGACTCAATTTTGGGGTTAGAATCAATCCAGTCTTTAGATTTCAGTCGCAACTCCTTTTCTGGTGATATGGCAGCATCATTGACAAAACTGACTAATTTGGTATCCCTTAATTTATCGTTAAATGGGTTTGAAAGTAAAATTCCAAAAGGTTTTGAGCTGCTTTCAAAACTTGAAATTCTTGACTTGCATGGGAATATGCTCAGTGGTCATCTGGATGAGGAATTCTTGCGATTTTCAAGTGCCATTCATGTTGACTTTAGTGGGAATATGCTAGTAAATTCTGGTTTGCAAAAACAGAATTTTTTATCCGGTATTTCTTCAACTGTTGCGTATTTAAATCTTAGCCATAACCAGCTTATGGGATCACTTGTAAGTGGAGGTGGACCACTGGAACTTGCTAACTTGAAGGTGTTGGATTTGAGCTACAATCAACTATCTGGAGAATTACCTGGATTTAATTTTCTGTATGCCCTTGAGGTCCTCAAGCTCAGCAACAATAGATTTACTGGGTTTATCCCCAATGACCTGCTGAAAGGAGATCCTTTGGTTCTAACTGAATTGGATTTGAGTGCCAACAATCTTTCAGGGCTGATAAATATGATCACATCAACAACTTTGAACATCCTTAATCTCTCCTCAAATGGGCTCTCAGGAGAGCTTCCACTGCTGACTGGCAGCTGCACTGTACTGGACCTGTCAAATAATGAATTTGAGGGAAACTTAACTAAATTGTTGAAATGGGGAAATATTGAATTTCTGGATCTCAGTCAGAATCGTTTGACAGGAGCTTTCCCTGAGGAAACCTCACAATTTCTCCGCCTAAATTACCTCAACCTCTCCCATAATTCTCTTAGGAGTTCTCTCCCAAAAGTTCTAACACTGTATCCCAAGCTTAGAGTCCTTGATCTTAGTTCTAACCAGTTTGATGGGCCACTTTTGGCTGATCTGTTAACATTGCCCACATTGCAAGAACTCTACCTTGAGAACAATTTATTCGCTGGTGCGATTGAGTTTTCTCCTCCCTCAGTCAATTCTAGTCTAAAGTTTCTAGATCTCTCTCAAAACCATCTTAATGGCTATTTTCCTGATCAATTTGGTTCATTAACAGCACTTCAAAGGCTCAATCTTGCTGCAAACAATCTATCTGGTTCTCTGCCAACATCCATGTCTGAGATGAACTCCCTAAGTTCATTAGACATATCCCAAAATAATTTCACAGGTCCTTTACCAAACAATTTTTCTAACAGCCTTGAAAGCTTTAATGCATCATACAACGATCTTTCTGGGACTGTTCCAGAAAGCCTGAGGAAGTTCCCTAGTTCTTCTTTCTTCCCTGGAAATAGTGGATTGCATTTACCTGGTGGTCCTCCTGGGTCAACTTCTTCTCCATCAGATTTTTCCAAGAGGAAGCCAATCAAAACTATTATCAAGGTGGTGATAATAGTTTCTTGTGTGGTTGCCGTTCTCATTTTTATCCTGCTTGCCATCTTCATACACTATATTCGTCTATCAAGGAGATCCACGCAGGAACATGTTACAAGGAAAGACATCCACAAAGGGGCTCCACAGAATCCCTCTGGCTTCAATGGAAGAGAAAGTGGTGGTGCTTTGGTTGTTTCAGCTGAGGATCTTTTGGCTTCACGGAAGGGATCGTCTTCTGAGATAATTAGCTCTGATGAGAAAATGGCAGTTGTAACTGGCTTCTCTCCGTCAAAAACCAGCCACTTATCTTGGTCCCCAGAGTCTGGTGATTCATTTACTGCCGAAAACCTTGCAAGACTTGATGTGAGGTCGCCAGATCAGTTGGCTGGTGAGCTGCATTTTCTTGATGATACAATCACATTGACACCTGAGGAGCTGTCAAGGGCCCCTGCTGAAGTGTTGGGTAGGAGCAGCCATGGAACTTCTTATAGGGCAACATTGGAGAATGGCGTCTTCTTGACTGTGAAGTGGTTGAGAGAAGGGGTGGCAAAAGAGAGAAAGGAGTTTGCTAAGGAGGCAAAAAAATTTGCAAACATCAGGCATCCAAATGTGGTTGGGTTGAGAGGATACTATTGGGGACCTACACAACATGAGAAGCTCATTCTTTCTGATTATATCTCACCCGGAAACCTTGCAAGCTTTCTTTATGATCGACCAGGAAGGAAAGGGCCGCCATTAACCTGGGCCCAGAGGCTCAAGATAGCTGTCGATGTTGCACGTGGCCTGAACTATCTCCATTTTGATCGTGCTGTGCCTCATGGAAACCTTAAAGCAACCAACATACTGTTAGATGGACCTGATCTTAATGCACGGGTTGCTGATTACTGCCTCCATCGCCTCATGACCCAGGCTGGCACCATTGAACAGATTCTTGATGCTGGGGTCCTAGGTTATCGTGCACCAGAGTTGGCTGCTTCCAAGAAGCCAATACCATCCTTCAAATCAGATGTTTATGCTTTTGGAGTGGTTCTGCTGGAACTTTTAACTGGCAAGTGTGCTGGTGATGTGGTCTCTGGTGAAGAGGGAGGGGTTGATTTGACAGATTGGGTGCGATTGAGGGTGGCAGAAGGTCGGGGATTAGATTGCTTGGATCCTGCAGTGGCACCTGAGATGGGAAATCCAGCAGCAGAGAAGGGGGTGAAGGAGGTGCTTGGAATCGCTCTTAGATGTATAAGGTCTGTTTCTGAGAGGCCAGGCATCAAGACTATATATGAGGATCTTTCGTCTATATGA 3195 0.4319 MMKLCTLLLVSLLFVSAMGQLPSQDILALLEFKKGIKHDPTGYVLNSWNEESIDFNGCPSSWNGIVCNGVNVAGVVLDHQGLSADVDLSVFSNLTMLVKLSMSGNSISGKIPDNIGDLKSLEYLDLSDNLFFSSLPPGIGKLANLKNLSLAGNNFSGSIPDSILGLESIQSLDFSRNSFSGDMAASLTKLTNLVSLNLSLNGFESKIPKGFELLSKLEILDLHGNMLSGHLDEEFLRFSSAIHVDFSGNMLVNSGLQKQNFLSGISSTVAYLNLSHNQLMGSLVSGGGPLELANLKVLDLSYNQLSGELPGFNFLYALEVLKLSNNRFTGFIPNDLLKGDPLVLTELDLSANNLSGLINMITSTTLNILNLSSNGLSGELPLLTGSCTVLDLSNNEFEGNLTKLLKWGNIEFLDLSQNRLTGAFPEETSQFLRLNYLNLSHNSLRSSLPKVLTLYPKLRVLDLSSNQFDGPLLADLLTLPTLQELYLENNLFAGAIEFSPPSVNSSLKFLDLSQNHLNGYFPDQFGSLTALQRLNLAANNLSGSLPTSMSEMNSLSSLDISQNNFTGPLPNNFSNSLESFNASYNDLSGTVPESLRKFPSSSFFPGNSGLHLPGGPPGSTSSPSDFSKRKPIKTIIKVVIIVSCVVAVLIFILLAIFIHYIRLSRRSTQEHVTRKDIHKGAPQNPSGFNGRESGGALVVSAEDLLASRKGSSSEIISSDEKMAVVTGFSPSKTSHLSWSPESGDSFTAENLARLDVRSPDQLAGELHFLDDTITLTPEELSRAPAEVLGRSSHGTSYRATLENGVFLTVKWLREGVAKERKEFAKEAKKFANIRHPNVVGLRGYYWGPTQHEKLILSDYISPGNLASFLYDRPGRKGPPLTWAQRLKIAVDVARGLNYLHFDRAVPHGNLKATNILLDGPDLNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELAASKKPIPSFKSDVYAFGVVLLELLTGKCAGDVVSGEEGGVDLTDWVRLRVAEGRGLDCLDPAVAPEMGNPAAEKGVKEVLGIALRCIRSVSERPGIKTIYEDLSSI* 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0648 1064 Pfam Leucine rich repeat N-terminal domain 23 68 IPR013210 -
Vvi10g0648 1064 ProSiteProfiles Protein kinase domain profile. 782 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0648 1064 FunFam Leucine-rich repeat receptor-like protein kinase 767 859 - -
Vvi10g0648 1064 Pfam Protein tyrosine and serine/threonine kinase 786 984 IPR001245 GO:0004672|GO:0006468
Vvi10g0648 1064 Pfam Leucine Rich repeat 294 308 IPR001611 GO:0005515
Vvi10g0648 1064 ProSiteProfiles Leucine-rich repeat profile. 433 455 IPR001611 GO:0005515
Vvi10g0648 1064 ProSiteProfiles Leucine-rich repeat profile. 294 316 IPR001611 GO:0005515
Vvi10g0648 1064 Gene3D Ribonuclease Inhibitor 259 623 IPR032675 -
Vvi10g0648 1064 Pfam Leucine Rich Repeat 318 337 IPR001611 GO:0005515
Vvi10g0648 1064 SUPERFAMILY L domain-like 44 381 - -
Vvi10g0648 1064 Gene3D Transferase(Phosphotransferase) domain 1 861 1064 - -
Vvi10g0648 1064 Pfam Leucine rich repeat 506 565 IPR001611 GO:0005515
Vvi10g0648 1064 Pfam Leucine rich repeat 413 468 IPR001611 GO:0005515
Vvi10g0648 1064 Pfam Leucine rich repeat 85 130 IPR001611 GO:0005515
Vvi10g0648 1064 SMART LRR_typ_2 292 314 IPR003591 -
Vvi10g0648 1064 SMART LRR_typ_2 431 454 IPR003591 -
Vvi10g0648 1064 SMART LRR_typ_2 190 213 IPR003591 -
Vvi10g0648 1064 SMART LRR_typ_2 142 166 IPR003591 -
Vvi10g0648 1064 SMART LRR_typ_2 479 506 IPR003591 -
Vvi10g0648 1064 SMART LRR_typ_2 118 141 IPR003591 -
Vvi10g0648 1064 SMART LRR_typ_2 528 552 IPR003591 -
Vvi10g0648 1064 SMART LRR_typ_2 315 339 IPR003591 -
Vvi10g0648 1064 SMART LRR_typ_2 214 238 IPR003591 -
Vvi10g0648 1064 SUPERFAMILY RNI-like 270 587 - -
Vvi10g0648 1064 FunFam Pollen receptor-like kinase 1 860 1064 - -
Vvi10g0648 1064 FunFam LRR receptor-like serine/threonine-protein kinase GHR1 21 266 - -
Vvi10g0648 1064 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 383 620 - -
Vvi10g0648 1064 SUPERFAMILY Protein kinase-like (PK-like) 785 1061 IPR011009 -
Vvi10g0648 1064 Gene3D Phosphorylase Kinase; domain 1 772 859 - -
Vvi10g0648 1064 Gene3D Ribonuclease Inhibitor 23 169 IPR032675 -
Vvi10g0648 1064 PANTHER OS07G0626500 PROTEIN 8 1064 - -
Vvi10g0648 1064 MobiDBLite consensus disorder prediction 671 692 - -
Vvi10g0648 1064 Gene3D Ribonuclease Inhibitor 170 258 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0648 Vvi-Chr10 8988701 8993369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0648 413 599 Receptor kinase-like Gene Family AT4G36180 32.275 2.82e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi10g0648 PK_Tyr_Ser-Thr 1.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0648 - - vvi:100247557 1876.68